Protein-Coding Segments: Evolution of Exon-Intron Gene Structure

作者: Igor B Rogozin

DOI: 10.1002/9780470015902.A0000887.PUB2

关键词:

摘要: Many eukaryotic genes are disrupted by noncoding regions of deoxyribonucleic acid (DNA) variable sizes called introns, giving the an exon–intron structure. Origin and evolution introns is important, long-standing problem. The availability multiple, complete genome sequences allows one to address many fundamental evolutionary questions. Analysis orthologous from completely sequenced genomes revealed numerous shared intron positions in between animals, fungi, plants protists. data on were used as starting point for reconstruction with various phylogenetic methods. These methods reconstructed intron-rich ancestors but cases inferred lineage-specific high levels loss gain. results indicate that present already at earliest stages eukaryotes compatible hypothesis original, catastrophic invasion accompanied emergence cells. Key concepts: The gene structure highly dynamic. Orthologous distant species share up 25–30% positions. Intron gains losses might occur during limited time spans. The Last Eukaryotic Common Ancestor was intron-rich. In course evolution, splice signal shifts exons introns. The scenario origin best comparative genomics goes follows: self-splicing since life's followed spliceosomal invading emerging subsequent gain introns. Keywords: gene structure; molecular evolution; introns; exons

参考文章(9)
Manyuan Long, Sandro J. de Souza, Intron-exon structures: from molecular to population biology. Advances in genome biology. Volume 5A: Genes and genomes.. ,vol. 5, pp. 143- 178 ,(1998) , 10.1016/S1067-5701(98)80020-X
P Sharp, Split genes and RNA splicing Cell. ,vol. 77, pp. 805- 815 ,(1994) , 10.1016/0092-8674(94)90130-9
M. Csuros, I. B. Rogozin, E. V. Koonin, Extremely Intron-Rich Genes in the Alveolate Ancestors Inferred with a Flexible Maximum-Likelihood Approach Molecular Biology and Evolution. ,vol. 25, pp. 903- 911 ,(2008) , 10.1093/MOLBEV/MSN039
Scott William Roy, Walter Gilbert, The evolution of spliceosomal introns: patterns, puzzles and progress Nature Reviews Genetics. ,vol. 7, pp. 211- 221 ,(2006) , 10.1038/NRG1807
John M Logsdon, The recent origins of spliceosomal introns revisited Current Opinion in Genetics & Development. ,vol. 8, pp. 637- 648 ,(1998) , 10.1016/S0959-437X(98)80031-2
Maki Yoshihama, Hung D. Nguyen, Naoya Kenmochi, Intron Dynamics in Ribosomal Protein Genes PLOS ONE. ,vol. 2, ,(2007) , 10.1371/JOURNAL.PONE.0000141
L. Carmel, Y. I. Wolf, I. B. Rogozin, E. V. Koonin, Three distinct modes of intron dynamics in the evolution of eukaryotes Genome Research. ,vol. 17, pp. 1034- 1044 ,(2007) , 10.1101/GR.6438607
Igor B Rogozin, Alexander V Sverdlov, Vladimir N Babenko, Eugene V Koonin, Analysis of evolution of exon-intron structure of eukaryotic genes Briefings in Bioinformatics. ,vol. 6, pp. 118- 134 ,(2005) , 10.1093/BIB/6.2.118