Assessment of statistical and neural networks methods in NMR spectral classification and metabolite selection

作者: P. J. G. Lisboa , S. P. J. Kirby , A. Vellido , Y. Y. B. Lee , W. El-Deredy

DOI: 10.1002/(SICI)1099-1492(199806/08)11:4/5<225::AID-NBM509>3.0.CO;2-Q

关键词:

摘要: Magnetic resonance spectroscopy opens a window into the biochemistry of living tissue. However, spectra acquired from different tissue types in vivo or vitro and body fluids contain large number peaks range metabolites, whose relative intensities vary substantially complicated ways even between successive samples same category. The realization full clinical potential NMR relies, part, on our ability to interpret quantify role individual metabolites characterizing specific conditions. This paper addresses problem classification by analysing using statistical neural network methods. It assesses performance models methods compares them with artificial models. also consistency selecting, directly spectra, subsets most relevant for differentiating types. analysis techniques are examined eight classes normal tumours obtained rats. We show that, given data set, linear non-linear is comparable, possibly due small sample size per class. that subset selected discriminant further networks improves accuracy, reduces necessary correct classification.

参考文章(17)
B. D. Ripley, Neural Networks and Related Methods for Classification Journal of the Royal Statistical Society: Series B (Methodological). ,vol. 56, pp. 409- 437 ,(1994) , 10.1111/J.2517-6161.1994.TB01990.X
Christopher M. Bishop, Neural networks for pattern recognition ,(1995)
C. R. Beddell, J. C. Lindon, J. K. Nicholson, K. P. R. Gartland, Application of pattern recognition methods to the analysis and classification of toxicological data derived from proton nuclear magnetic resonance spectroscopy of urine. Molecular Pharmacology. ,vol. 39, pp. 629- 642 ,(1991)
Mark C Preul, Zografos Caramanos, D Louis Collins, Jean-Guy Villemure, Richard Leblanc, Andre Olivier, Ronald Pokrupa, Douglas L Arnold, None, Accurate, noninvasive diagnosis of human brain tumors by using proton magnetic resonance spectroscopy. Nature Medicine. ,vol. 2, pp. 323- 325 ,(1996) , 10.1038/NM0396-323
Tautvydas Cibas, Françoise Fogelman Soulié, Patrick Gallinari, Sarunas Raudys, Variable selection with neural networks Neurocomputing. ,vol. 12, pp. 223- 248 ,(1996) , 10.1016/0925-2312(95)00121-2
S. L. Howells, R. J. Maxwell, A. C. Peet, J.R. Griffiths, An investigation of tumor 1H nuclear magnetic resonance spectra by the application of chemometric techniques. Magnetic Resonance in Medicine. ,vol. 28, pp. 214- 236 ,(1992) , 10.1002/MRM.1910280205
Maria L. Anthony, Valerie S. Rose, Jeremy K. Nicholson, John C. Lindon, Classification of toxin-induced changes in 1H NMR spectra of urine using an artificial neural network Journal of Pharmaceutical and Biomedical Analysis. ,vol. 13, pp. 205- 211 ,(1995) , 10.1016/0731-7085(95)01278-S
Halbert White, Learning in Artificial Neural Networks: A Statistical Perspective Neural Computation. ,vol. 1, pp. 425- 464 ,(1989) , 10.1162/NECO.1989.1.4.425
N.M. Branston, R.J. Maxwell, S.L. Howells, Generalization performance using backpropagation algorithms applied to patterns derived from tumour 1 H NMR spectra Journal of Microcomputer Applications. ,vol. 16, pp. 113- 123 ,(1993) , 10.1006/JMCA.1993.1010