Functional Genomics of Pathogenesis

作者: J. Ranjani , P. Gunasekaran , J. Rajendhran

DOI: 10.1016/B978-0-444-63667-6.00006-7

关键词:

摘要: Abstract Functional genomics is a global, systematic, and comprehensive approach to elucidating the processes pathways involved in various physiological states. An array of functional platforms such as transcriptomics, proteomics, metabolomics, ionomics, fluxomics, secretomics, etc., facilitates elucidation pathogenesis mechanisms, especially host–pathogen interactions. A handful complete genome sequences pathogens well hosts serve employ high-throughput approaches. Transcriptome analysis promising tool analyze global gene expression patterns. Simultaneous transcriptome host pathogen provides more insights into signaling regulatory networks during pathogenesis. Proteome illustrating bacterial In addition “omics” approaches, transposon mutagenesis-based approaches provide new clues interactions information on genes essential for infection.

参考文章(90)
Chun-Hao Huang, Shyh-Horng Chiou, Clinical proteomics identifies potential biomarkers inHelicobacter pylorifor gastrointestinal diseases World Journal of Gastroenterology. ,vol. 20, pp. 1529- 1536 ,(2014) , 10.3748/WJG.V20.I6.1529
Avraham Rasooly, Keith E. Herold, Food Microbial Pathogen Detection and Analysis Using DNA Microarray Technologies Foodborne Pathogens and Disease. ,vol. 5, pp. 531- 550 ,(2008) , 10.1089/FPD.2008.0119
MJ Mahan, JM Slauch, JJ Mekalanos, Selection of bacterial virulence genes that are specifically induced in host tissues Science. ,vol. 259, pp. 686- 688 ,(1993) , 10.1126/SCIENCE.8430319
M Hensel, J. Shea, C Gleeson, M. Jones, E Dalton, D. Holden, Simultaneous identification of bacterial virulence genes by negative selection Science. ,vol. 269, pp. 400- 403 ,(1995) , 10.1126/SCIENCE.7618105
Evelyn J Strauss, Stanley Falkow, Microbial Pathogenesis: Genomics and Beyond Science. ,vol. 276, pp. 707- 712 ,(1997) , 10.1126/SCIENCE.276.5313.707
Peggy A Cotter, Jeff F Miller, In vivo and ex vivo regulation of bacterial virulence gene expression. Current Opinion in Microbiology. ,vol. 1, pp. 17- 26 ,(1998) , 10.1016/S1369-5274(98)80138-0
Stefan P. W. de Vries, Rob J. A. Rademakers, Christa E. van der Gaast-de Jongh, Marc J. Eleveld, Peter W. M. Hermans, Hester J. Bootsma, Deciphering the genetic basis of Moraxella catarrhalis complement resistance: a critical role for the disulphide bond formation system Molecular Microbiology. ,vol. 91, pp. 522- 537 ,(2014) , 10.1111/MMI.12475
Florence B Gilbert, Patricia Cunha, Kirsty Jensen, Elizabeth J Glass, Gilles Foucras, Christèle Robert-Granié, Rachel Rupp, Pascal Rainard, Differential response of bovine mammary epithelial cells to Staphylococcus aureus or Escherichia coli agonists of the innate immune system Veterinary Research. ,vol. 44, pp. 40- 40 ,(2013) , 10.1186/1297-9716-44-40
S. McNicholas, A. C. Shore, D. C. Coleman, H. Humphreys, D. F. Hughes, DNA Microarray Genotyping and Virulence and Antimicrobial Resistance Gene Profiling of Methicillin-Resistant Staphylococcus aureus Bloodstream Isolates from Renal Patients Journal of Clinical Microbiology. ,vol. 49, pp. 4349- 4351 ,(2011) , 10.1128/JCM.05017-11
Cole Trapnell, Adam Roberts, Loyal Goff, Geo Pertea, Daehwan Kim, David R Kelley, Harold Pimentel, Steven L Salzberg, John L Rinn, Lior Pachter, Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks Nature Protocols. ,vol. 7, pp. 562- 578 ,(2012) , 10.1038/NPROT.2012.016