Increased Missense Mutation Burden of Fatty Acid Metabolism Related Genes in Nunavik Inuit Population

作者: Sirui Zhou , Lan Xiong , Pingxing Xie , Amirthagowri Ambalavanan , Cynthia V. Bourassa

DOI: 10.1371/JOURNAL.PONE.0128255

关键词:

摘要: Background Nunavik Inuit (northern Quebec, Canada) reside along the arctic coastline where for generations their daily energy intake has mainly been derived from animal fat. Given this particular diet it hypothesized that natural selection would lead to population specific allele frequency differences and unique variants in genes related fatty acid metabolism. A group of genes, namely CPT1A, CPT1B, CPT1C, CPT2, CRAT CROT, encode three carnitine acyltransferases are important oxidation acids, a critical step metabolism. Methods Exome sequencing SNP array genotyping were used examine genetic variations six encoding 113 Nunavik individuals. Results Altogether ten missense found CPT2 CRAT, including novel one variant CPT1A p.P479L (rs80356779). The latter highest (0.955) compared other populations. We by comparison Asians or Europeans, have an increased mutation burden CRAT; there is also high level differentiation based on acyltransferase gene between Asians. Conclusion The number deleterious these metabolism may be result adaptation and/or extremely cold climate. In addition, identification help understand some health risks Inuit.

参考文章(44)
Thomas Wieser, Carnitine Palmitoyltransferase II Deficiency University of Washington, Seattle. ,(2014)
Sabine Illsinger, Thomas Lücke, Michael Peter, Jos P.N. Ruiter, Ronald J.A. Wanders, Marcus Deschauer, Ingrid Handig, Wim Wuyts, Anibh M. Das, Carnitine-palmitoyltransferase 2 deficiency: novel mutations and relevance of newborn screening. American Journal of Medical Genetics Part A. ,vol. 146, pp. 2925- 2928 ,(2008) , 10.1002/AJMG.A.32545
Chloe Miu Mak, Ching-wan Lam, Nai-chung Fong, Wai-kwan Siu, Han-chih Hencher Lee, Tak-shing Siu, Chi-kong Lai, Chun-yiu Law, Sui-fun Tong, Wing-tat Poon, David Shu-yan Lam, Ho-leung Ng, Yuet-ping Yuen, Sidney Tam, Tak-lun Que, Ngai-shan Kwong, Albert Yan-wo Chan, Fatal viral infection-associated encephalopathy in two Chinese boys: a genetically determined risk factor of thermolabile carnitine palmitoyltransferase II variants. Journal of Human Genetics. ,vol. 56, pp. 617- 621 ,(2011) , 10.1038/JHG.2011.63
K. Wang, M. Li, H. Hakonarson, ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data Nucleic Acids Research. ,vol. 38, ,(2010) , 10.1093/NAR/GKQ603
Sorcha A Collins, Padma Surmala, Geraldine Osborne, Cheryl Greenberg, Laakkuluk Williamson Bathory, Sharon Edmunds-Potvin, Laura Arbour, Causes and risk factors for infant mortality in Nunavut, Canada 1999–2011 BMC Pediatrics. ,vol. 12, pp. 190- 190 ,(2012) , 10.1186/1471-2431-12-190
Mette C. Ørngreen, Morten Dunø, Rasmus Ejstrup, Ernst Christensen, Marianne Schwartz, Massimo Sacchetti, John Vissing, Fuel utilization in subjects with carnitine palmitoyltransferase 2 gene mutations Annals of Neurology. ,vol. 57, pp. 60- 66 ,(2005) , 10.1002/ANA.20320
Alexander Macaulay, Pamela Orr, Sharon Macdonald, Lawrence Elliott, Rosemary Brown, Anne Durcan, Bruce Martin, Mortality in the Kivalliq Region of Nunavut, 1987–1996 International Journal of Circumpolar Health. ,vol. 63, pp. 80- 85 ,(2004) , 10.3402/IJCH.V63I0.17819
Y. Chen, H. Mizuguchi, D. Yao, M. Ide, Y. Kuroda, Y. Shigematsu, S. Yamaguchi, M. Yamaguchi, M. Kinoshita, H. Kido, Thermolabile phenotype of carnitine palmitoyltransferase II variations as a predisposing factor for influenza-associated encephalopathy. FEBS Letters. ,vol. 579, pp. 2040- 2044 ,(2005) , 10.1016/J.FEBSLET.2005.02.050
B. S. Weir, C. Clark Cockerham, ESTIMATING F -STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE Evolution. ,vol. 38, pp. 1358- 1370 ,(1984) , 10.1111/J.1558-5646.1984.TB05657.X
Deborah M. Muoio, Robert C. Noland, Jean-Paul Kovalik, Sarah E. Seiler, Michael N. Davies, Karen L. DeBalsi, Olga R. Ilkayeva, Robert D. Stevens, Indu Kheterpal, Jingying Zhang, Jeffrey D. Covington, Sudip Bajpeyi, Eric Ravussin, William Kraus, Timothy R. Koves, Randall L. Mynatt, Muscle-Specific Deletion of Carnitine Acetyltransferase Compromises Glucose Tolerance and Metabolic Flexibility Cell Metabolism. ,vol. 15, pp. 764- 777 ,(2012) , 10.1016/J.CMET.2012.04.005