Metabonomic analysis of hepatitis B virus-induced liver failure: identification of potential diagnostic biomarkers by fuzzy support vector machine *

作者: Yong Mao , Xin Huang , Ke Yu , Hai-bin Qu , Chang-xiao Liu

DOI: 10.1631/JZUS.B0820044

关键词:

摘要: Hepatitis B virus (HBV)-induced liver failure is an emergent disease leading to high mortality. The severity of may be reflected by the profile some metabolites. This study assessed potential using metabolites as biomarkers for identifying with good discriminative performance its phenotype. serum samples from 24 HBV-induced patients and 23 healthy volunteers were collected analyzed gas chromatography-mass spectrometry (GC-MS) generate metabolite profiles. further grouped into two classes according failure. Twenty-five commensal peaks in all profiles extracted, relative area values these used features each sample. Three algorithms, F-test, k-nearest neighbor (KNN) fuzzy support vector machine (FSVM) combined exhaustive search (ES), employed identify a subset (biomarkers) that best predict Based on achieved experimental dataset, 93.62% predictive accuracy 6 was selected FSVM-ES three key metabolites, glyceric acid, cis-aconitic acid citric are identified diagnostic biomarkers.

参考文章(18)
M Fontaine, N Porchet, C Largilliere, S Marrakchi, M Lhermitte, J P Aubert, P Degand, Biochemical contribution to diagnosis and study of a new case of D-glyceric acidemia/aciduria. Clinical Chemistry. ,vol. 35, pp. 2148- 2151 ,(1989) , 10.1093/CLINCHEM/35.10.2148
Jeremy K. Nicholson, Ian D. Wilson, Understanding 'Global' Systems Biology: Metabonomics and the Continuum of Metabolism Nature Reviews Drug Discovery. ,vol. 2, pp. 668- 676 ,(2003) , 10.1038/NRD1157
Moulay A. Alaoui-Jamali, Ying-jie Xu, Proteomic technology for biomarker profiling in cancer: an update * Journal of Zhejiang University-science B. ,vol. 7, pp. 411- 420 ,(2006) , 10.1631/JZUS.2006.B0411
Yong MAO, Zheng XIA, Zheng YIN, Youxian SUN, Zheng WAN, Fault Diagnosis Based on Fuzzy Support Vector Machine with Parameter Tuning and Feature Selection Chinese Journal of Chemical Engineering. ,vol. 15, pp. 233- 239 ,(2007) , 10.1016/S1004-9541(07)60064-0
Jan Luts, Arend Heerschap, Johan A.K. Suykens, Sabine Van Huffel, A combined MRI and MRSI based multiclass system for brain tumour recognition using LS-SVMs with class probabilities and feature selection Artificial Intelligence in Medicine. ,vol. 40, pp. 87- 102 ,(2007) , 10.1016/J.ARTMED.2007.02.002
Kosuke Arai, Kyongbum Lee, François Berthiaume, Ronald G Tompkins, Martin L Yarmush, Intrahepatic amino acid and glucose metabolism in a D-galactosamine-induced rat liver failure model. Hepatology. ,vol. 34, pp. 360- 371 ,(2001) , 10.1053/JHEP.2001.26515
J YANG, G XU, Y ZHENG, H KONG, T PANG, S LV, Q YANG, Diagnosis of liver cancer using HPLC-based metabonomics avoiding false-positive result from hepatitis and hepatocirrhosis diseases. Journal of Chromatography B. ,vol. 813, pp. 59- 65 ,(2004) , 10.1016/J.JCHROMB.2004.09.032
J.R. Parker, Rank and response combination from confusion matrix data Information Fusion. ,vol. 2, pp. 113- 120 ,(2001) , 10.1016/S1566-2535(01)00030-6