Identification of correct regions in protein models using structural, alignment, and consensus information.

作者: Björn Wallner , Arne Elofsson

DOI: 10.1110/PS.051799606

关键词:

摘要: Identification of correct regions in protein models using structural, evolutionary and consensus information

参考文章(56)
Christopher M. Bishop, Neural networks for pattern recognition ,(1995)
Niklas von Ohsen, Ralf Zimmer, Improving Profile-Profile Alignments via Log Average Scoring workshop on algorithms in bioinformatics. pp. 11- 26 ,(2001) , 10.1007/3-540-44696-6_2
Govind S. Mudholkar, Fisher's z‐Transformation Wiley StatsRef: Statistics Reference Online. ,(2006) , 10.1002/0471667196.ESS0796.PUB2
Björn Wallner, Arne Elofsson, Can correct protein models be identified? Protein Science. ,vol. 12, pp. 1073- 1086 ,(2003) , 10.1110/PS.0236803
David Eisenberg, Roland Lüthy, James U. Bowie, VERIFY3D: assessment of protein models with three-dimensional profiles. Methods in Enzymology. ,vol. 277, pp. 396- 404 ,(1997) , 10.1016/S0076-6879(97)77022-8
Jiye Shi, Tom L Blundell, Kenji Mizuguchi, FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties. Journal of Molecular Biology. ,vol. 310, pp. 243- 257 ,(2001) , 10.1006/JMBI.2001.4762
B. Lee, F.M. Richards, The interpretation of protein structures: Estimation of static accessibility Journal of Molecular Biology. ,vol. 55, pp. 379- IN4 ,(1971) , 10.1016/0022-2836(71)90324-X
M. Levitt, M. Gerstein, A unified statistical framework for sequence comparison and structure comparison Proceedings of the National Academy of Sciences of the United States of America. ,vol. 95, pp. 5913- 5920 ,(1998) , 10.1073/PNAS.95.11.5913
Andreas Heger, Liisa Holm, Exhaustive Enumeration of Protein Domain Families Journal of Molecular Biology. ,vol. 328, pp. 749- 767 ,(2003) , 10.1016/S0022-2836(03)00269-9