Uncovering historical signature of mitochondrial DNA hidden in the nuclear genome: the biogeography ofSchistocercarevisited

作者: Hojun Song , Matthew J. Moulton , Kevin D. Hiatt , Michael F. Whiting

DOI: 10.1111/CLA.12013

关键词:

摘要: Inadvertent coamplification of nuclear mitochondrial pseudogenes (numts) is a serious problem in systematics, but numts can also be valuable source information because they represent ancient forms mtDNA. We present conceptual framework numt accumulation, which states that given species there two types numts, synaponumts and autaponumts, resulting from integration occurring respectively before after speciation event. In clade, diverged early only have its own autaponumts as well were already the genome last common ancestor. A more recently may, however, many different integrated at each divergence autaponumts. Therefore it possible to decipher evolutionary history based on phylogenetic distribution simultaneous analysis extant this study, we test idea empirically context addressing controversial question regarding biogeography grasshopper genus Schistocerca Stal (Orthoptera: Acrididae), cytochrome c oxidase subunit I (COI) gene. find our empirical data explained adequately by framework, COI reveals intricate histories about past events are otherwise difficult detect using conventional markers. Our study strongly favours Old World origin desert locust, gregaria New descendants an ancestral gregaria-like colonized via westward transatlantic flight. However, S. raises distinct possibility might been multiple founding Africa America give rise present-day diversity genus. This case for creative use molecular fossils, demonstrate provide interesting powerful signal, much than what mtDNA or gene sequences able provide.

参考文章(86)
Makoto Fukuda, Shoji Wakasugi, Teruhisa Tsuzuki, Hisayuki Nomiyama, Kazunori Shimada, Takashi Miyata, Mitochondrial DNA-like sequences in the human nuclear genome: Characterization and implications in the evolution of mitochondrial DNA Journal of Molecular Biology. ,vol. 186, pp. 257- 266 ,(1985) , 10.1016/0022-2836(85)90102-0
David R. Wolstenholme, Animal mitochondrial DNA: structure and evolution. International Review of Cytology-a Survey of Cell Biology. ,vol. 141, pp. 173- 216 ,(1992) , 10.1016/S0074-7696(08)62066-5
Y Satta, E T Matsuura, S I Chigusa, N Takahata, H Ishiwa, R Kondo, Incomplete Maternal Transmission of Mitochondrial DNA in Drosophila Genetics. ,vol. 126, pp. 657- 663 ,(1990) , 10.1093/GENETICS/126.3.657
N LO, C BANDI, H WATANABE, CA NALEPA, T BENINATI, Phylogeny of Mantodea based on molecular data: evolution of a charismatic predator Systematic Entomology. ,vol. 29, pp. 359- 370 ,(2004) , 10.1111/J.0307-6970.2004.00240.X
William Modi, Naoya Yuhki, Ryuichi Masuda, Stephen James O'Brien, Jose V. Lopez, Numt, a recent transfer and tandem amplification of mitochondrial DNA to the nuclear genome of the domestic cat. Journal of Molecular Evolution. ,vol. 39, pp. 174- 190 ,(1994) , 10.1007/BF00163806
SILVIO ERLER, HANS-JÖRG FERENZ, ROBIN F. A. MORITZ, HANS-HINRICH KAATZ, Analysis of the mitochondrial genome of Schistocerca gregaria gregaria (Orthoptera: Acrididae) Biological Journal of The Linnean Society. ,vol. 99, pp. 296- 305 ,(2010) , 10.1111/J.1095-8312.2009.01365.X
O. THALMANN, D. SERRE, M. HOFREITER, D. LUKAS, J. ERIKSSON, L. VIGILANT, Nuclear insertions help and hinder inference of the evolutionary history of gorilla mtDNA Molecular Ecology. ,vol. 14, pp. 179- 188 ,(2004) , 10.1111/J.1365-294X.2004.02382.X
ANDREIA MIRALDO, GODFREY M. HEWITT, PAUL H. DEAR, OCTAVIO S. PAULO, BRENT C. EMERSON, Numts help to reconstruct the demographic history of the ocellated lizard (Lacerta lepida) in a secondary contact zone Molecular Ecology. ,vol. 21, pp. 1005- 1018 ,(2012) , 10.1111/J.1365-294X.2011.05422.X