Formation of a tyrosine adduct involved in lignin degradation by Trametopsis cervina lignin peroxidase: a novel peroxidase activation mechanism.

作者: Yuta Miki , Rebecca Pogni , Sandra Acebes , Fátima Lucas , Elena Fernández-Fueyo

DOI: 10.1042/BJ20130251

关键词:

摘要: LiP (lignin peroxidase) from Trametopsis cervina has an exposed catalytic tyrosine residue (Tyr181) instead of the tryptophan conserved in other lignin-degrading peroxidases. Pristine showed a lag period VA (veratryl alcohol) oxidation. However, VA-LiP (LiP after treatment with H2O2 and VA) lacked this lag, H2O2-LiP (H2O2-treated LiP) was inactive. MS analyses revealed that includes one molecule covalently bound to side chain Tyr181, whereas contains hydroxylated Tyr181. No adduct is formed Y171N variant. Molecular docking binding favoured by sandwich π stacking Tyr181 Phe89. EPR spectroscopy peroxide activation pre-treated LiPs protein radicals than radical found pristine LiP, which were assigned tyrosine-VA dihydroxyphenyalanine H2O2-LiP. Both are able oxidize large low-redox-potential substrates, but unable high-redox-potential substrates. Transient-state kinetics strongly promotes (>100-fold) substrate oxidation compound II, rate-limiting step catalysis. The novel mechanism involved ligninolysis, as demonstrated using lignin model present paper first report on autocatalytic modification, resulting functional alteration, among class II

参考文章(36)
K.E. Hammel, K.A. Jensen, M.D. Mozuch, L.L. Landucci, M. Tien, E.A. Pease, Ligninolysis by a purified lignin peroxidase. Journal of Biological Chemistry. ,vol. 268, pp. 12274- 12281 ,(1993) , 10.1016/S0021-9258(18)31385-1
H Wariishi, M H Gold, Lignin peroxidase compound III. Mechanism of formation and decomposition. Journal of Biological Chemistry. ,vol. 265, pp. 2070- 2077 ,(1990) , 10.1016/S0021-9258(19)39941-7
Yuta Miki, Hirofumi Ichinose, Hiroyuki Wariishi, Molecular characterization of lignin peroxidase from the white-rot basidiomycete Trametes cervina: a novel fungal peroxidase Fems Microbiology Letters. ,vol. 304, pp. 39- 46 ,(2010) , 10.1111/J.1574-6968.2009.01880.X
Victor Guallar, Heme electron transfer in peroxidases: the propionate e-pathway. Journal of Physical Chemistry B. ,vol. 112, pp. 13460- 13464 ,(2008) , 10.1021/JP806435D
Rebecca Pogni, M. Camilla Baratto, Stefania Giansanti, Christian Teutloff, Jorge Verdin, Brenda Valderrama, Friedhelm Lendzian, Wolfgang Lubitz, Rafael Vazquez-Duhalt, Riccardo Basosi, Tryptophan-based radical in the catalytic mechanism of versatile peroxidase from Bjerkandera adusta. Biochemistry. ,vol. 44, pp. 4267- 4274 ,(2005) , 10.1021/BI047474L
Hiroyuki Wariishi, Dawei Sheng, Michael H. Gold, Oxidation of ferrocytochrome c by lignin peroxidase. Biochemistry. ,vol. 33, pp. 5545- 5552 ,(1994) , 10.1021/BI00184A025
Mohammad R. Seyedsayamdost, JoAnne Stubbe, Site-specific replacement of Y356 with 3,4-dihydroxyphenylalanine in the β2 subunit of E. coli ribonucleotide reductase Journal of the American Chemical Society. ,vol. 128, pp. 2522- 2523 ,(2006) , 10.1021/JA057776Q
Wolfgang Blodig, Wendy A. Doyle, Andrew T. Smith, Kaspar Winterhalter, Thomas Choinowski, Klaus Piontek, Autocatalytic formation of a hydroxy group at C beta of trp171 in lignin peroxidase. Biochemistry. ,vol. 37, pp. 8832- 8838 ,(1998) , 10.1021/BI9727186
Francisco J. Ruiz-Dueñas, Thomas Choinowski, Klaus Piontek, Angel T. Martínez, Friedhelm Lendzian, Riccardo Basosi, Rebecca Pogni, M. Camilla Baratto, Christian Teutloff, Stefania Giansanti, A tryptophan neutral radical in the oxidized state of versatile peroxidase from Pleurotus eryngii: a combined multifrequency EPR and density functional theory study. Journal of Biological Chemistry. ,vol. 281, pp. 9517- 9526 ,(2006) , 10.1074/JBC.M510424200
Wendy A. Doyle, Wolfgang Blodig, Nigel C. Veitch, Klaus Piontek, Andrew T. Smith, Two Substrate Interaction Sites in Lignin Peroxidase Revealed by Site-Directed Mutagenesis† Biochemistry. ,vol. 37, pp. 15097- 15105 ,(1998) , 10.1021/BI981633H