Application of genomic technologies to measure and monitor antibiotic resistance in animals.

作者: Jian-Qiang Su , Li Cui , Qing-Lin Chen , Xin-Li An , Yong-Guan Zhu

DOI: 10.1111/NYAS.13296

关键词:

摘要: One of the richest reservoirs antibiotic-resistant bacteria and genes, animal intestinal microbiota contributes to spread antibiotic resistance in environment and, potentially, human pathogens. Both culture-based genomic technology culture-independent metagenomics have been developed investigate abundance diversity genes. The characteristics, strengths, limitations, challenges these approaches are discussed this review context animals. We also discuss advances single-cell genomics its potential for surveillance

参考文章(196)
Julie Ann Perry, Erin Louise Westman, Gerard D Wright, None, The antibiotic resistome: what's new? Current Opinion in Microbiology. ,vol. 21, pp. 45- 50 ,(2014) , 10.1016/J.MIB.2014.09.002
Baowei Chen, Ying Yang, Ximei Liang, Ke Yu, Tong Zhang, Xiangdong Li, Metagenomic profiles of antibiotic resistance genes (ARGs) between human impacted estuary and deep ocean sediments Environmental Science & Technology. ,vol. 47, pp. 12753- 12760 ,(2013) , 10.1021/ES403818E
Christian Rinke, Janey Lee, Nandita Nath, Danielle Goudeau, Brian Thompson, Nicole Poulton, Elizabeth Dmitrieff, Rex Malmstrom, Ramunas Stepanauskas, Tanja Woyke, None, Obtaining genomes from uncultivated environmental microorganisms using FACS–based single-cell genomics Nature Protocols. ,vol. 9, pp. 1038- 1048 ,(2014) , 10.1038/NPROT.2014.067
Vanessa M D’Costa, Christine E King, Lindsay Kalan, Mariya Morar, Wilson WL Sung, Carsten Schwarz, Duane Froese, Grant Zazula, Fabrice Calmels, Regis Debruyne, G Brian Golding, Hendrik N Poinar, Gerard D Wright, None, Antibiotic resistance is ancient Nature. ,vol. 477, pp. 457- 461 ,(2011) , 10.1038/NATURE10388
Nadine Czekalski, Tom Berthold, Serena Caucci, Andrea Egli, Helmut Bürgmann, Increased levels of multiresistant bacteria and resistance genes after wastewater treatment and their dissemination into lake geneva, Switzerland. Frontiers in Microbiology. ,vol. 3, pp. 106- 106 ,(2012) , 10.3389/FMICB.2012.00106
Tanja Kostić, Beatrix Stessl, Martin Wagner, Angela Sessitsch, Levente Bodrossy, Microbial diagnostic microarray for food- and water-borne pathogens Microbial Biotechnology. ,vol. 3, pp. 444- 454 ,(2010) , 10.1111/J.1751-7915.2010.00176.X
Todd Z. DeSantis, Eoin L. Brodie, Jordan P. Moberg, Ingrid X. Zubieta, Yvette M. Piceno, Gary L. Andersen, High-Density Universal 16S rRNA Microarray Analysis Reveals Broader Diversity than Typical Clone Library When Sampling the Environment Microbial Ecology. ,vol. 53, pp. 371- 383 ,(2007) , 10.1007/S00248-006-9134-9
B. A. Rogers, H. E. Sidjabat, D. L. Paterson, Escherichia coli O25b-ST131: a pandemic, multiresistant, community-associated strain Journal of Antimicrobial Chemotherapy. ,vol. 66, pp. 1- 14 ,(2011) , 10.1093/JAC/DKQ415
Andrew G McArthur, Nicholas Waglechner, Fazmin Nizam, Austin Yan, Marisa A Azad, Alison J Baylay, Kirandeep Bhullar, Marc J Canova, Gianfranco De Pascale, Linda Ejim, Lindsay Kalan, Andrew M King, Kalinka Koteva, Mariya Morar, Michael R Mulvey, Jonathan S O'Brien, Andrew C Pawlowski, Laura JV Piddock, Peter Spanogiannopoulos, Arlene D Sutherland, Irene Tang, Patricia L Taylor, Maulik Thaker, Wenliang Wang, Marie Yan, Tennison Yu, Gerard D Wright, None, The Comprehensive Antibiotic Resistance Database Antimicrobial Agents and Chemotherapy. ,vol. 57, pp. 3348- 3357 ,(2013) , 10.1128/AAC.00419-13
B. M. Marshall, S. B. Levy, Food Animals and Antimicrobials: Impacts on Human Health Clinical Microbiology Reviews. ,vol. 24, pp. 718- 733 ,(2011) , 10.1128/CMR.00002-11