Functional genomics: lessons from yeast.

作者: Stephen G. Oliver

DOI: 10.1098/RSTB.2001.1049

关键词:

摘要: Functional genomics represents a systematic approach to elucidating the function of novel genes revealed by complete genome sequences. Such an should adopt hierarchical strategy since this will both limit number experiments be performed and permit closer approximation any individual gene achieved. Moreover, analyses have, in their early stages, tremendous integrative power functional aims at comprehensive view workings living cells. The first draft human sequence has just been produced, sequences eukaryotic pathogens (including parasitic protozoa Plasmodium, Leishmania, Trypanosoma) soon available. However, most rapid progress elucidation initially made using model organisms. Yeast is excellent least 40% single-gene determinants heritable diseases find homologues yeast. We have adopted analysis Saccharomyces cerevisiae genome. A approaches for yeast are discussed. different grouped into four domains: genome, transcriptome, proteome, metabolome. utility genetic, biochemical, physico-chemical methods these domains discussed, importance framing precise biological questions, when analytical methods, emphasized. Finally, prospects protozoan pioneered with yeast, even exploiting itself, as surrogate, explored.

参考文章(59)
Guri Giaever, Daniel D. Shoemaker, Ted W. Jones, Hong Liang, Elizabeth A. Winzeler, Anna Astromoff, Ronald W. Davis, Genomic profiling of drug sensitivities via induced haploinsufficiency. Nature Genetics. ,vol. 21, pp. 278- 283 ,(1999) , 10.1038/6791
Steve G Oliver, Quirina JM van der Aart, Maria L Agostoni-Carbone, Michel Aigle, Lilia Alberghina, Despina Alexandraki, G Antoine, R Anwar, JPG Ballesta, P Benit, G Berben, Elisabetta Bergantino, N Biteau, PA Bolle, M Bolotin-Fukuhara, A Brown, AJP Brown, JM Buhler, C Carcano, G Carignani, H Cederberg, R Chanet, R Contreras, M Crouzet, B Daignan-Fornier, E Defoor, M Delgado, J Demolder, C Doira, E Dubois, B Dujon, A Dusterhoft, D Erdmann, M Esteban, F Fabre, C Fairhead, G Faye, H Feldmann, W Fiers, MC Francingues-Gaillard, L Franco, L Frontali, H Fukuhara, LJ Fuller, P Galland, ME Gent, D Gigot, V Gilliquet, N Glansdorff, A Goffeau, M Grenson, P Grisanti, LA Grivell, M De Haan, M Haasemann, D Hatat, J Hoenicka, J Hegemann, CJ Herbert, F Hilger, S Hohmann, CP Hollenberg, K Huse, F Iborra, KJ Indje, K Isono, C Jacq, M Jacquet, CM James, JC Jauniaux, Y Jia, A Jimenez, A Kelly, U Kleinhans, P Kreisl, Gerolamo Lanfranchi, C Lewis, CG Vanderlinden, G Lucchini, K Lutzenkirchen, MJ Maat, L Mallet, G Mannhaupet, E Martegani, A Mathieu, CTC Maurer, D McConnell, RA McKee, F Messenguy, HW Mewes, F Molemans, MA Montague, M Muzi Falconi, L Navas, CS Newlon, D Noone, C Pallier, L Panzeri, BM Pearson, J Perea, P Philippsen, A Pierard, RJ Planta, P Plevani, B Poetsch, F Pohl, B Purnelle, M Ramezani Rad, SW Rasmussen, A Raynal, M Remacha, P Richterich, AB Roberts, F Rodriguez, E Sanz, I Schaaff-Gerstenschlager, B Scherens, B Schweitzer, Y Shu, J Skala, PP Slonimski, F Sor, C Soustelle, R Spiegelberg, LI Stateva, HY Steensma, S Steiner, A Thierry, G Thireos, M Tzermia, LA Urrestarazu, Giorgio Valle, I Vetter, JC van Vliet-Reedijk, M Voet, G Volckaert, P Vreken, H Wang, JR Warmington, D Von Wettstein, BL Wicksteed, C Wilson, H Wurst, G Xu, A Yoshikawa, FK Zimmermann, JG Sgouros, None, The complete DNA sequence of yeast chromosome III. Nature. ,vol. 357, pp. 38- 46 ,(1992) , 10.1038/357038A0
Andrew J. Link, Jimmy Eng, David M. Schieltz, Edwin Carmack, Gregory J. Mize, David R. Morris, Barbara M. Garvik, John R. Yates, Direct analysis of protein complexes using mass spectrometry Nature Biotechnology. ,vol. 17, pp. 676- 682 ,(1999) , 10.1038/10890
Bas Teusink, Frank Baganz, Hans V. Westerhoff, Stephen G. Oliver, Metabolic control analysis as a tool in the elucidation of the function of novel genes Methods in Microbiology. ,vol. 26, pp. 297- 336 ,(1998) , 10.1016/S0580-9517(08)70338-6
V.J. Thon, M. Khalil, J.F. Cannon, Isolation of human glycogen branching enzyme cDNAs by screening complementation in yeast. Journal of Biological Chemistry. ,vol. 268, pp. 7509- 7513 ,(1993) , 10.1016/S0021-9258(18)53204-X
Gerard Cagney, Peter Uetz, Stanley Fields, High-throughput screening for protein-protein interactions using two-hybrid assay. Methods in Enzymology. ,vol. 328, pp. 3- 14 ,(2000) , 10.1016/S0076-6879(00)28386-9
Alvis Brazma, Alan Robinson, Graham Cameron, Michael Ashburner, One-stop shop for microarray data. Nature. ,vol. 403, pp. 699- 700 ,(2000) , 10.1038/35001676
Jean-Michel Claverie, What If There Are Only 30,000 Human Genes? Science. ,vol. 291, pp. 1255- 1257 ,(2001) , 10.1126/SCIENCE.1058969
Ulrich Güldener, Susanne Heck, Thomas Fiedler, Jens Beinhauer, Johannes H Hegemann, A New Efficient Gene Disruption Cassette for Repeated Use in Budding Yeast Nucleic Acids Research. ,vol. 24, pp. 2519- 2524 ,(1996) , 10.1093/NAR/24.13.2519