Molecular anatomy: phyletic relationships derived from three-dimensional structures of proteins
作者： Mark S. Johnson , Michael J. Sutcliffe , Tom L. Blundell
DOI: 10.1007/BF02102452
关键词:
摘要: A distance measure that reflects the dissimilarity among structures has been developed on basis of three-dimensional similar proteins, this being totally independent sequence in sense only relative spatial positions mainchain alpha-carbon atoms need be known. This procedure leads to phyletic relationships are general correlated with phylogenies based residue type. Such known protein also a useful aid their classification and selection knowledge-based modeling using homologous structures. We have applied approach six sets proteins: immunoglobulin fragments, globins, cytochromes c, serine proteinases, eye-lens gamma crystallins, dinucleotide-binding domains.
springer.com
manchester.ac.uk参考文章(96)
Tsunehiro Takano, Richard E. Dickerson, Conformation change of cytochrome c. II. Ferricytochrome c refinement at 1.8 A and comparison with the ferrocytochrome structure. Journal of Molecular Biology. ,vol. 153, pp. 95- 115 ,(1981) , 10.1016/0022-2836(81)90529-5
Wolfram Bode, Zhongguo Chen, Klaus Bartels, Carl Kutzbach, Guenther Schmidt-Kastner, Hans Bartunik, Refined 2 Å X-ray crystal structure of porcine pancreatic kallikrein A, a specific trypsin-like serine proteinase Journal of Molecular Biology. ,vol. 164, pp. 237- 282 ,(1983) , 10.1016/0022-2836(83)90077-3
C. Chothia, A.M. Lesk, The relation between the divergence of sequence and structure in proteins. The EMBO Journal. ,vol. 5, pp. 823- 826 ,(1986) , 10.1002/J.1460-2075.1986.TB04288.X
P Argos, M Hanei, J M Wilson, W N Kelley, A possible nucleotide-binding domain in the tertiary fold of phosphoribosyltransferases. Journal of Biological Chemistry. ,vol. 258, pp. 6450- 6457 ,(1983) , 10.1016/S0021-9258(18)32431-1
R. Timkovich, The structure of Paracoccus denitrificans cytochrome c550. Journal of Biological Chemistry. ,vol. 251, pp. 4033- 4046 ,(1976) , 10.2210/PDB155C/PDB
F.R. Salemme, S.T. Freer, Ng. H. Xuong, R.A. Alden, J. Kraut, The Structure of Oxidized Cytochrome c2 of Rhodospirillum rubrum Journal of Biological Chemistry. ,vol. 248, pp. 3910- 3921 ,(1973) , 10.1016/S0021-9258(19)43820-9
M Pierrot, R Haser, M Frey, F Payan, J P Astier, Crystal structure and electron transfer properties of cytochrome c3. Journal of Biological Chemistry. ,vol. 257, pp. 14341- 14348 ,(1982) , 10.1016/S0021-9258(19)45386-6
F.A. Saul, L.M. Amzel, R.J. Poljak, Preliminary refinement and structural analysis of the Fab fragment from human immunoglobulin new at 2.0 A resolution. Journal of Biological Chemistry. ,vol. 253, pp. 585- 597 ,(1978) , 10.1016/S0021-9258(17)38249-2
Cyrus Chothia, Arthur M. Lesk, Evolution of proteins formed by β-sheets Journal of Molecular Biology. ,vol. 160, pp. 309- 323 ,(1982) , 10.1016/0022-2836(82)90178-4
Arthur M. Lesk, Cyrus Chothia, Evolution of proteins formed by β-sheets Journal of Molecular Biology. ,vol. 160, pp. 325- 342 ,(1982) , 10.1016/0022-2836(82)90179-6