Grip it and rip it: Structural mechanisms of DNA helicase substrate binding and unwinding

作者: Basudeb Bhattacharyya , James L. Keck

DOI: 10.1002/PRO.2533

关键词:

摘要: Maintenance and faithful transmission of genomic information depends on the efficient execution numerous DNA replication, recombination, repair pathways. Many enzymes that catalyze steps within these pathways require access to sequence is buried in interior double helix, which makes unwinding an essential cellular reaction. The process mediated by specialized molecular motors called helicases couple chemical energy derived from nucleoside triphosphate hydrolysis otherwise non-spontaneous An impressive number high-resolution helicase structures are now available that, together with equally important mechanistic studies, have begun define features allow this class function as motors. In review, we explore structural used bind unwind DNA. We focus particular "aromatic-rich loops" some single-stranded binding ATP "wedge/pin" elements provide mechanical tools for strand separation when connected translocating motor domains.

参考文章(74)
David C. Beyer, Mohamed Karem Ghoneim, Maria Spies, Structure and Mechanisms of SF2 DNA Helicases. Advances in Experimental Medicine and Biology. ,vol. 767, pp. 47- 73 ,(2013) , 10.1007/978-1-4614-5037-5_3
Colin G. Wu, Maria Spies, Overview: What Are Helicases? Advances in Experimental Medicine and Biology. ,vol. 767, pp. 1- 16 ,(2013) , 10.1007/978-1-4614-5037-5_1
Kevin D. Raney, Alicia K. Byrd, Suja Aarattuthodiyil, Structure and Mechanisms of SF1 DNA Helicases. Advances in Experimental Medicine and Biology. ,vol. 767, pp. 17- 46 ,(2013) , 10.1007/978-1-4614-5037-5_2
Robert A Pugh, Colin G Wu, Maria Spies, Regulation of translocation polarity by helicase domain 1 in SF2B helicases. The EMBO Journal. ,vol. 31, pp. 503- 514 ,(2012) , 10.1038/EMBOJ.2011.412
Kayarat Saikrishnan, Joseph T Yeeles, Neville S Gilhooly, Wojciech W Krajewski, Mark S Dillingham, Dale B Wigley, Insights into Chi recognition from the structure of an AddAB-type helicase-nuclease complex The EMBO Journal. ,vol. 31, pp. 1568- 1578 ,(2012) , 10.1038/EMBOJ.2012.9
Alicia K Byrd, Kevin D Raney, Protein displacement by an assembly of helicase molecules aligned along single-stranded DNA Nature Structural & Molecular Biology. ,vol. 11, pp. 531- 538 ,(2004) , 10.1038/NSMB774