Regularized logistic regression with adjusted adaptive elastic net for gene selection in high dimensional cancer classification

作者: Zakariya Yahya Algamal , Muhammad Hisyam Lee

DOI: 10.1016/J.COMPBIOMED.2015.10.008

关键词:

摘要: Cancer classification and gene selection in high-dimensional data have been popular research topics genetics molecular biology. Recently, adaptive regularized logistic regression using the elastic net regularization, which is called net, has successfully applied cancer to tackle both estimating coefficients performing simultaneously. The originally used estimates as initial weight, however, this weight may not be preferable for certain reasons: First, estimator biased selecting genes. Second, it does perform well when pairwise correlations between variables are high. Adjusted (AAElastic) proposed address these issues encourage grouping effects real results indicate that AAElastic significantly consistent genes compared other three competitor regularization methods. Additionally, performance of comparable better than Thus, we can conclude a reliable method field classification. showed superior terms all evaluation criteria.The selected more correlated methods.The performed remarkably stability test.In consistency, well.

参考文章(50)
Zakariya Yahya Algamal, Muhammad Hisyam Lee, Penalized logistic regression with the adaptive LASSO for gene selection in high-dimensional cancer classification Expert Systems With Applications. ,vol. 42, pp. 9326- 9332 ,(2015) , 10.1016/J.ESWA.2015.08.016
Erika Cule, Maria De Iorio, Ridge Regression in Prediction Problems: Automatic Choice of the Ridge Parameter Genetic Epidemiology. ,vol. 37, pp. 704- 714 ,(2013) , 10.1002/GEPI.21750
Yanming Di, Daniel W Schafer, Jason S Cumbie, Jeff H Chang, The NBP Negative Binomial Model for Assessing Differential Gene Expression from RNA-Seq Statistical Applications in Genetics and Molecular Biology. ,vol. 10, pp. 1- 28 ,(2011) , 10.2202/1544-6115.1637
Zeny Z. Feng, Xiaojian Yang, Sanjeena Subedi, Paul D. McNicholas, The LASSO and Sparse Least Squares Regression Methods for SNP Selection in Predicting Quantitative Traits IEEE/ACM Transactions on Computational Biology and Bioinformatics. ,vol. 9, pp. 629- 636 ,(2012) , 10.1109/TCBB.2011.139
Dajun Du, Kang Li, Xue Li, Minrui Fei, A novel forward gene selection algorithm for microarray data Neurocomputing. ,vol. 133, pp. 446- 458 ,(2014) , 10.1016/J.NEUCOM.2013.12.012
B. Chandra, Manish Gupta, An efficient statistical feature selection approach for classification of gene expression data Journal of Biomedical Informatics. ,vol. 44, pp. 529- 535 ,(2011) , 10.1016/J.JBI.2011.01.001
Xiaofei Nan, Nan Wang, Ping Gong, Chaoyang Zhang, Yixin Chen, Dawn Wilkins, Biomarker discovery using 1-norm regularization for multiclass earthworm microarray gene expression data Neurocomputing. ,vol. 92, pp. 36- 43 ,(2012) , 10.1016/J.NEUCOM.2011.09.035
Hongyi Peng, Yinlian Fu, Jinshan Liu, Xiang Fang, Chunfu Jiang, Optimal gene subset selection using the modified SFFS algorithm for tumor classification Neural Computing and Applications. ,vol. 23, pp. 1531- 1538 ,(2013) , 10.1007/S00521-012-1148-2
Jan Kalina, Classification methods for high-dimensional genetic data Biocybernetics and Biomedical Engineering. ,vol. 34, pp. 10- 18 ,(2014) , 10.1016/J.BBE.2013.09.007