SSR-enriched genetic linkage maps of bermudagrass (Cynodon dactylon × transvaalensis), and their comparison with allied plant genomes
作者： Sameer Khanal , Changsoo Kim , Susan A. Auckland , Lisa K. Rainville , Jeevan Adhikari
DOI: 10.1007/S00122-017-2854-Z
关键词:
摘要: We report SSR-enriched genetic maps of bermudagrass that: (1) reveal partial residual polysomic inheritance in the tetraploid species, and (2) provide insights into evolution chloridoid genomes. This study describes linkage two Cynodon dactylon (T89) transvaalensis (T574), that integrate heterologous microsatellite markers from sugarcane frameworks built with single-dose restriction fragments (SDRFs). A maximum likelihood approach was used to construct separate parental a population 110 F1 progeny cross between parents. The T89 map is based on 291 loci 34 cosegregating groups (CGs), an average marker spacing 12.5 cM. T574 125 14 CGs, 10.7 cM. Six one CG(s) deviated disomic inheritance. Furthermore, segregation data phase analysis revealed T89, suggesting common undergoing diploidization following whole genome duplication (WGD). Twenty-six CGs were coalesced 9 homo(eo)logous (LGs), while 12 assembled LGs, both putatively representing basic chromosome complement (x = 9) species. Eight remain unassigned. composition ancestral chromosomes inferred by aligning homologs, comparisons sorghum rice sequences 108 91 significant blast hits, respectively. Two nested fusions (NCFs) shared other chloridoids (i.e., zoysiagrass finger millet) at least three independent translocation events evident during number reduction polyploid ancestor Poaceae Cynodon.
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sci-hub.se 参考文章(102)
Bert John Hoff, THE CYTOLOGY AND FERTILITY OF BERMUDAGRASS, CYNODON DACTYLON (L.) PERS., IN ARIZONA The University of Arizona.. ,(1967)
Leah Ann Moore Brilman, CHROMOSOME MORPHOLOGY IN CYNODON DACTYLON (L.) PERS. The University of Arizona.. ,(1981)
G. Ledyard Stebbins, Types of polyploids; their classification and significance. Advances in Genetics. ,vol. 1, pp. 403- 429 ,(1947) , 10.1016/S0065-2660(08)60490-3
G. R. A. MARGARIDO, A. P. SOUZA, A. A. F. GARCIA, OneMap: software for genetic mapping in outcrossing species Hereditas. ,vol. 144, pp. 78- 79 ,(2007) , 10.1111/J.2007.0018-0661.02000.X
Kenneth Lange, Michael Boehnke, How many polymorphic genes will it take to span the human genome American Journal of Human Genetics. ,vol. 34, pp. 842- 845 ,(1982)
J. R. Harlan, Cynodon species and their value for grazing and hay. Herbage Abstracts. ,vol. 40, pp. 233- 238 ,(1970)
J. M. J. deWet, Origins of Polyploids Polyploidy. ,vol. 13, pp. 3- 15 ,(1980) , 10.1007/978-1-4613-3069-1_1
G.S. Pereira, E.S. Nunes, L.D.C. Laperuta, M.F. Braga, H.A. Penha, A.L. Diniz, C.F. Munhoz, R. Gazaffi, A.A.F. Garcia, M.L.C. Vieira, Molecular polymorphism and linkage analysis in sweet passion fruit, an outcrossing species Annals of Applied Biology. ,vol. 162, pp. 347- 361 ,(2013) , 10.1111/AAB.12028
Robert J. SORENG, Paul M. PETERSON, Konstantin ROMASCHENKO, Gerrit DAVIDSE, Fernando O. ZULOAGA, Emmet J. JUDZIEWICZ, Tarciso S. FILGUEIRAS, Jerrold I. DAVIS, Osvaldo MORRONE, A worldwide phylogenetic classification of the Poaceae (Gramineae) Journal of Systematics and Evolution. ,vol. 53, pp. 117- 137 ,(2015) , 10.1111/JSE.12150
Ganna Chornokur, Hui-Yi Lin, Jonathan P. Tyrer, Kate Lawrenson, Joe Dennis, Ernest K. Amankwah, Xiaotao Qu, Christine S. Walsh, Shan Wang-Gohrke, Nicolas Wentzensen, Alice S. Whittemore, Kristine G. Wicklund, Lynne R. Wilkens, Anna H. Wu, Xifeng Wu, Yin-Ling Woo, Hannah Yang, Wei Zheng, Argyrios Ziogas, Hanis N. Hasmad, Andrew Berchuck, Edwin S. Iversen, Joellen M. Schildkraut, Susan J. Ramus, Ellen L. Goode, Alvaro N. A. Monteiro, Simon A. Gayther, Steven A. Narod, Paul D. P. Pharoah, Thomas A. Sellers, Catherine M. Phelan, , Ya-Yu Tsai, Heather S. L. Jim, Zhihua Chen, Ann Y. Chen, Jennifer Permuth-Wey, Katja KH. Aben, Hoda Anton-Culver, Natalia Antonenkova, Fiona Bruinsma, Elisa V. Bandera, Yukie T. Bean, Matthias W. Beckmann, Maria Bisogna, Line Bjorge, Natalia Bogdanova, Louise A. Brinton, Angela Brooks-Wilson, Clareann H. Bunker, Ralf Butzow, Ian G. Campbell, Karen Carty, Jenny Chang-Claude, Linda S. Cook, Daniel W. Cramer, Julie M. Cunningham, Cezary Cybulski, Agnieszka Dansonka-Mieszkowska, Andreas du Bois, Evelyn Despierre, Ed Dicks, Jennifer A. Doherty, Thilo Dörk, Matthias Dürst, Douglas F. Easton, Diana M. Eccles, Robert P. Edwards, Arif B. Ekici, Peter A. Fasching, Brooke L. Fridley, Yu-Tang Gao, Aleksandra Gentry-Maharaj, Graham G. Giles, Rosalind Glasspool, Marc T. Goodman, Jacek Gronwald, Patricia Harrington, Philipp Harter, Alexander Hein, Florian Heitz, Michelle A. T. Hildebrandt, Peter Hillemanns, Claus K. Hogdall, Estrid Hogdall, Satoyo Hosono, Anna Jakubowska, Allan Jensen, Bu-Tian Ji, Beth Y. Karlan, Linda E. Kelemen, Mellissa Kellar, Lambertus A. Kiemeney, Camilla Krakstad, Susanne K. Kjaer, Jolanta Kupryjanczyk, Diether Lambrechts, Sandrina Lambrechts, Nhu D. Le, Alice W. Lee, Shashi Lele, Arto Leminen, Jenny Lester, Douglas A. Levine, Dong Liang, Boon Kiong Lim, Jolanta Lissowska, Karen Lu, Jan Lubinski, Lene Lundvall, Leon F. A. G. Massuger, Keitaro Matsuo, Valerie McGuire, John R. McLaughlin, Iain McNeish, Usha Menon, Roger L. Milne, Francesmary Modugno, Kirsten B. Moysich, Roberta B. Ness, Heli Nevanlinna, Ursula Eilber, Kunle Odunsi, Sara H. Olson, Irene Orlow, Sandra Orsulic, Rachel Palmieri Weber, James Paul, Celeste L. Pearce, Tanja Pejovic, Liisa M. Pelttari, Malcolm C. Pike, Elizabeth M. Poole, Harvey A. Risch, Barry Rosen, Mary Anne Rossing, Joseph H. Rothstein, Anja Rudolph, Ingo B. Runnebaum, Iwona K. Rzepecka, Helga B. Salvesen, Eva Schernhammer, Ira Schwaab, Xiao-Ou Shu, Yurii B. Shvetsov, Nadeem Siddiqui, Weiva Sieh, Honglin Song, Melissa C. Southey, Beata Spiewankiewicz, Lara Sucheston, Soo-Hwang Teo, Kathryn L. Terry, Pamela J. Thompson, Lotte Thomsen, Ingvild L. Tangen, Shelley S. Tworoger, Anne M. van Altena, Robert A. Vierkant, Ignace Vergote, Common Genetic Variation In Cellular Transport Genes and Epithelial Ovarian Cancer (EOC) Risk PLOS ONE. ,vol. 10, pp. 1- 17 ,(2015) , 10.1371/JOURNAL.PONE.0128106