Genomic Alterations of Non-Coding Regions Underlie Human Cancer: Lessons from T-ALL

作者: Adrian Rivera-Reyes , Katharina E. Hayer , Craig H. Bassing

DOI: 10.1016/J.MOLMED.2016.10.004

关键词:

摘要: … in cancer cells had suggested a role of cis-acting factors in … Such intra-TAD structures vary among cell types and stages, … TIL16 lies between the long non-coding RNA LOC595101 …

参考文章(64)
Takaomi Sanda, Lee N. Lawton, M. Inmaculada Barrasa, Zi Peng Fan, Holger Kohlhammer, Alejandro Gutierrez, Wenxue Ma, Jessica Tatarek, Yebin Ahn, Michelle A. Kelliher, Catriona H.M. Jamieson, Louis M. Staudt, Richard A. Young, A. Thomas Look, Core Transcriptional Regulatory Circuit Controlled by the TAL1 Complex in Human T Cell Acute Lymphoblastic Leukemia Cancer Cell. ,vol. 22, pp. 209- 221 ,(2012) , 10.1016/J.CCR.2012.06.007
E. Lieberman-Aiden, N. L. van Berkum, L. Williams, M. Imakaev, T. Ragoczy, A. Telling, I. Amit, B. R. Lajoie, P. J. Sabo, M. O. Dorschner, R. Sandstrom, B. Bernstein, M. A. Bender, M. Groudine, A. Gnirke, J. Stamatoyannopoulos, L. A. Mirny, E. S. Lander, J. Dekker, Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science. ,vol. 326, pp. 289- 293 ,(2009) , 10.1126/SCIENCE.1181369
Zhihu Zhao, Gholamreza Tavoosidana, Mikael Sjölinder, Anita Göndör, Piero Mariano, Sha Wang, Chandrasekhar Kanduri, Magda Lezcano, Kuljeet Singh Sandhu, Umashankar Singh, Vinod Pant, Vijay Tiwari, Sreenivasulu Kurukuti, Rolf Ohlsson, Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra-and interchromosomal interactions Nature Genetics. ,vol. 38, pp. 1341- 1347 ,(2006) , 10.1038/NG1891
L. R. Finger, J. Kagan, G. Christopher, J. Kurtzberg, M. S. Hershfield, P. C. Nowell, C. M. Croce, Involvement of the TCL5 gene on human chromosome 1 in T-cell leukemia and melanoma. Proceedings of the National Academy of Sciences. ,vol. 86, pp. 5039- 5043 ,(1989) , 10.1073/PNAS.86.13.5039
Olivier Bernard, Paul Guglielmi, Philippe Jonveaux, Dorra Cherif, Sylvia Gisselbrecht, Martine Mauchauffe, Roland Berger, Christian-Jacques Larsen, Daniele Mathieu-Mahul, Two distinct mechanisms for the SCL gene activation in the t(1;14) translocation of T-cell leukemias. Genes, Chromosomes and Cancer. ,vol. 1, pp. 194- 208 ,(1990) , 10.1002/GCC.2870010303
Inderpreet Sur, Sari Tuupanen, Thomas Whitington, Lauri A. Aaltonen, Jussi Taipale, Lessons from functional analysis of genome-wide association studies. Cancer Research. ,vol. 73, pp. 4180- 4184 ,(2013) , 10.1158/0008-5472.CAN-13-0789
Franklin W Huang, Eran Hodis, Mary Jue Xu, Gregory V Kryukov, Lynda Chin, Levi A Garraway, Highly Recurrent TERT Promoter Mutations in Human Melanoma Science. ,vol. 339, pp. 957- 959 ,(2013) , 10.1126/SCIENCE.1229259
S. Ogilvy, R. Ferreira, S. G. Piltz, J. M. Bowen, B. Göttgens, A. R. Green, The SCL +40 enhancer targets the midbrain together with primitive and definitive hematopoiesis and is regulated by SCL and GATA proteins Molecular and Cellular Biology. ,vol. 27, pp. 7206- 7219 ,(2007) , 10.1128/MCB.00931-07
Jill M. Dowen, Zi Peng Fan, Denes Hnisz, Gang Ren, Brian J. Abraham, Lyndon N. Zhang, Abraham S. Weintraub, Jurian Schuijers, Tong Ihn Lee, Keji Zhao, Richard A. Young, Control of Cell Identity Genes Occurs in Insulated Neighborhoods in Mammalian Chromosomes Cell. ,vol. 159, pp. 374- 387 ,(2014) , 10.1016/J.CELL.2014.09.030
Nathaniel D. Heintzman, Gary C. Hon, R. David Hawkins, Pouya Kheradpour, Alexander Stark, Lindsey F. Harp, Zhen Ye, Leonard K. Lee, Rhona K. Stuart, Christina W. Ching, Keith A. Ching, Jessica E. Antosiewicz-Bourget, Hui Liu, Xinmin Zhang, Roland D. Green, Victor V. Lobanenkov, Ron Stewart, James A. Thomson, Gregory E. Crawford, Manolis Kellis, Bing Ren, Histone modifications at human enhancers reflect global cell-type-specific gene expression Nature. ,vol. 459, pp. 108- 112 ,(2009) , 10.1038/NATURE07829