Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus

作者: Suzana Hadjur , Luke M. Williams , Natalie K. Ryan , Bradley S. Cobb , Tom Sexton

DOI: 10.1038/NATURE08079

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摘要: Cohesin-mediated sister chromatid cohesion is essential for chromosome segregation and post-replicative DNA repair. In addition, evidence from model organisms human genetics suggests that cohesin involved in the control of gene expression. This non-canonical role has recently been rationalized by findings mammalian complexes are recruited to a subset DNase I hypersensitive sites conserved noncoding sequences DNA-binding protein CTCF. CTCF functions at insulators (which interactions between enhancers promoters) boundary elements demarcate regions distinct chromatin structure), contributes its enhancer-blocking activity. The underlying mechanisms remain unknown, full spectrum remains be determined. Here we show forms topological mechanistic basis cell-type-specific long-range chromosomal cis developmentally regulated cytokine locus IFNG. Hence, ability constrain topology used not only purpose cohesion, but also dynamically define spatial conformation specific loci. new aspect function probably important normal development disease.

参考文章(31)
Claudia Ribeiro de Almeida, Helen Heath, Sanja Krpic, Gemma M. Dingjan, Jan Piet van Hamburg, Ingrid Bergen, Suzanne van de Nobelen, Frank Sleutels, Frank Grosveld, Niels Galjart, Rudi W. Hendriks, Critical Role for the Transcription Regulator CCCTC-Binding Factor in the Control of Th2 Cytokine Expression Journal of Immunology. ,vol. 182, pp. 999- 1010 ,(2009) , 10.4049/JIMMUNOL.182.2.999
Kirsten A. Hagstrom, Barbara J. Meyer, Condensin and cohesin: More than chromosome compactor and glue Nature Reviews Genetics. ,vol. 4, pp. 520- 534 ,(2003) , 10.1038/NRG1110
Julie A Wallace, Gary Felsenfeld, We gather together: insulators and genome organization Current Opinion in Genetics & Development. ,vol. 17, pp. 400- 407 ,(2007) , 10.1016/J.GDE.2007.08.005
Dong U. Lee, Orly Avni, Lin Chen, Anjana Rao, A Distal Enhancer in the Interferon-γ (IFN-γ) Locus Revealed by Genome Sequence Comparison Journal of Biological Chemistry. ,vol. 279, pp. 4802- 4810 ,(2004) , 10.1074/JBC.M307904200
Andrea Pauli, Friederike Althoff, Raquel A. Oliveira, Stefan Heidmann, Oren Schuldiner, Christian F. Lehner, Barry J. Dickson, Kim Nasmyth, Cell-Type-Specific TEV Protease Cleavage Reveals Cohesin Functions in Drosophila Neurons Developmental Cell. ,vol. 14, pp. 239- 251 ,(2008) , 10.1016/J.DEVCEL.2007.12.009
S. Cuddapah, R. Jothi, D. E. Schones, T.-Y. Roh, K. Cui, K. Zhao, Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains Genome Research. ,vol. 19, pp. 24- 32 ,(2008) , 10.1101/GR.082800.108
Julia A Horsfield, Sasha H Anagnostou, Jimmy Kuang-Hsien Hu, Kitty Hsiao Yu Cho, Robert Geisler, Graham Lieschke, Kathryn E Crosier, Philip S Crosier, Cohesin-dependent regulation of Runx genes Development. ,vol. 134, pp. 2639- 2649 ,(2007) , 10.1242/DEV.002485
David R Fitzpatrick, John A Stamatoyannopoulos, Christopher B Wilson, Jamie R Schoenborn, Michael O Dorschner, Masayuki Sekimata, Deanna M Santer, Maria Shnyreva, Comprehensive epigenetic profiling identifies multiple distal regulatory elements directing transcription of the gene encoding interferon-gamma. Nature Immunology. ,vol. 8, pp. 732- 742 ,(2007) , 10.1038/NI1474
Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Dustin E. Schones, Zhibin Wang, Gang Wei, Iouri Chepelev, Keji Zhao, High-resolution profiling of histone methylations in the human genome. Cell. ,vol. 129, pp. 823- 837 ,(2007) , 10.1016/J.CELL.2007.05.009
Bin Zhang, Sanjay Jain, Haengseok Song, Ming Fu, Robert O Heuckeroth, Jonathan M Erlich, Patrick Y Jay, Jeffrey Milbrandt, None, Mice lacking sister chromatid cohesion protein PDS5B exhibit developmental abnormalities reminiscent of Cornelia de Lange syndrome Development. ,vol. 134, pp. 3191- 3201 ,(2007) , 10.1242/DEV.005884