Early developmental genomic assay for characterizing pluripotent stem cell utility and safety

作者: Alexander Tsankov , Veronika Akopian , Alexander Meissner

DOI:

关键词:

摘要: The present invention generally relates to a set of early developmental reference data or “lineage scorecard” for stem cells, and methods, systems kits generate lineage scorecard predicting the functionality suitability cell lines. In some aspects, methods generating comprises measuring gene expression plurality genes, such as pluripotent, ectoderm, mesoderm endoderm genes predict pluripotency differentiation potential line its and/or desired use. embodiments, can be compared with test accurately utility identify specific characteristics line, e.g., determine downstream applications, therapeutic use, drug screening, toxicity assays, into lineage, etc.

参考文章(154)
Gabriella L *Boulting, Evangelos *Kiskinis, Gist F *Croft, Mackenzie W *Amoroso, Derek H *Oakley, Brian J Wainger, Damian J Williams, David J Kahler, Mariko Yamaki, Lance Davidow, Christopher T Rodolfa, John T Dimos, Shravani Mikkilineni, Amy B MacDermott, Clifford J Woolf, Christopher E Henderson, Hynek Wichterle, Kevin Eggan, (*Co-First authors), None, A functionally characterized test set of human induced pluripotent stem cells Nature Biotechnology. ,vol. 29, pp. 279- 286 ,(2011) , 10.1038/NBT.1783
Alan Colman, Oliver Dreesen, Pluripotent stem cells and disease modeling. Cell Stem Cell. ,vol. 5, pp. 244- 247 ,(2009) , 10.1016/J.STEM.2009.08.010
Mark H. Chin, Mike J. Mason, Wei Xie, Stefano Volinia, Mike Singer, Cory Peterson, Gayane Ambartsumyan, Otaren Aimiuwu, Laura Richter, Jin Zhang, Ivan Khvorostov, Vanessa Ott, Michael Grunstein, Neta Lavon, Nissim Benvenisty, Carlo M. Croce, Amander T. Clark, Tim Baxter, April D. Pyle, Mike A. Teitell, Matteo Pelegrini, Kathrin Plath, William E. Lowry, Induced Pluripotent Stem Cells and Embryonic Stem Cells Are Distinguished by Gene Expression Signatures Cell Stem Cell. ,vol. 5, pp. 111- 123 ,(2009) , 10.1016/J.STEM.2009.06.008
Chad A. Cowan, Irina Klimanskaya, Jill McMahon, Jocelyn Atienza, Jeannine Witmyer, Jacob P. Zucker, Shunping Wang, Cynthia C. Morton, Andrew P. McMahon, Doug Powers, Douglas A. Melton, Derivation of embryonic stem-cell lines from human blastocysts. The New England Journal of Medicine. ,vol. 350, pp. 1353- 1356 ,(2004) , 10.1056/NEJMSR040330
Maisam Mitalipova, John Calhoun, Soojung Shin, David Wininger, Thomas Schulz, Scott Noggle, Alison Venable, Ian Lyons, Allan Robins, Steven Stice, Human Embryonic Stem Cell Lines Derived from Discarded Embryos Stem Cells. ,vol. 21, pp. 521- 526 ,(2003) , 10.1634/STEMCELLS.21-5-521
Hanna Segev, Bettina Fishman, Anna Ziskind, Margarita Shulman, Joseph Itskovitz-Eldor, Differentiation of Human Embryonic Stem Cells into Insulin-Producing Clusters STEM CELLS. ,vol. 22, pp. 265- 274 ,(2004) , 10.1634/STEMCELLS.22-3-265
Gary K Geiss, Roger E Bumgarner, Brian Birditt, Timothy Dahl, Naeem Dowidar, Dwayne L Dunaway, H Perry Fell, Sean Ferree, Renee D George, Tammy Grogan, Jeffrey J James, Malini Maysuria, Jeffrey D Mitton, Paola Oliveri, Jennifer L Osborn, Tao Peng, Amber L Ratcliffe, Philippa J Webster, Eric H Davidson, Leroy Hood, Krassen Dimitrov, Direct multiplexed measurement of gene expression with color-coded probe pairs. Nature Biotechnology. ,vol. 26, pp. 317- 325 ,(2008) , 10.1038/NBT1385
Kim Baumann, Holding on to the memories Nature Reviews Molecular Cell Biology. ,vol. 11, pp. 601- 601 ,(2010) , 10.1038/NRM2962
Matthias Stadtfeld, Effie Apostolou, Hidenori Akutsu, Atsushi Fukuda, Patricia Follett, Sridaran Natesan, Tomohiro Kono, Toshi Shioda, Konrad Hochedlinger, Aberrant silencing of imprinted genes on chromosome 12qF1 in mouse induced pluripotent stem cells Nature. ,vol. 465, pp. 175- 181 ,(2010) , 10.1038/NATURE09017
Alice E. Chen, Dieter Egli, Kathy Niakan, Jie Deng, Hidenori Akutsu, Mariko Yamaki, Chad Cowan, Claire Fitz-Gerald, Kun Zhang, Douglas A. Melton, Kevin Eggan, Optimal Timing of Inner Cell Mass Isolation Increases the Efficiency of Human Embryonic Stem Cell Derivation and Allows Generation of Sibling Cell Lines Cell Stem Cell. ,vol. 4, pp. 103- 106 ,(2009) , 10.1016/J.STEM.2008.12.001