RefSeq and LocusLink: NCBI gene-centered resources.

作者: Kim D Pruitt , Donna R Maglott

DOI: 10.1093/NAR/29.1.137

关键词:

摘要: Thousands of genes have been painstakingly identified and characterized a few at time. Many thousands more are being predicted by large scale cDNA genomic sequencing projects, with levels evidence ranging from supporting mRNA sequence comparative genomics to computing ab initio models. This, coupled the burgeoning scientific literature, makes it critical comprehensive directory for reference sequences key genomes. The NCBI provides two resources, LocusLink RefSeq, meet these needs. organizes information around generate central hub accessing gene-specific fruit fly, human, mouse, rat zebrafish. RefSeq standards genomes, transcripts proteins; mouse RefSeqs, their corresponding proteins, discussed here. Together, provide non-redundant view other loci support research on gene families, variation, expression genome annotation. Additional about is available http://www.ncbi.nlm.nih.gov/LocusLink/.

参考文章(12)
K. Frazer, J. Frezal, D. Lancet, J. Nahmias, P. Pearson, J. Peters, A. Scott, H. Scott, N. Spurr, C. Talbot, S. Povey, J.A. White, P.J. McAlpine, S. Antonarakis, H. Cann, J.T. Eppig, Guidelines for human gene nomenclature (1997). HUGO Nomenclature Committee. Genomics. ,vol. 45, pp. 468- 471 ,(1997) , 10.1006/GENO.1997.4979
Gregory D. Schuler, Jonathan A. Epstein, Hitomi Ohkawa, Jonathan A. Kans, ENTREZ : MOLECULAR BIOLOGY DATABASE AND RETRIEVAL SYSTEM Methods in Enzymology. ,vol. 266, pp. 141- 162 ,(1996) , 10.1016/S0076-6879(96)66012-1
Monte Westerfield, Eckehard Doerry, Arthur E. Kirkpatrick, Sarah A. Douglas, Zebrafish informatics and the ZFIN database. Methods in Cell Biology. ,vol. 60, pp. 339- 355 ,(1998) , 10.1016/S0091-679X(08)61909-3
Stephen T. Sherry, Minghong Ward, Karl Sirotkin, dbSNP-database for single nucleotide polymorphisms and other classes of minor genetic variation. Genome Research. ,vol. 9, pp. 677- 679 ,(1999) , 10.1101/GR.9.8.677
Gregory D. Schuler, Pieces of the puzzle: expressed sequence tags and the catalog of human genes. Journal of Molecular Medicine. ,vol. 75, pp. 694- 698 ,(1997) , 10.1007/S001090050155
Wonhee Jang, Hsiu-Chuan Chen, Hugues Sicotte, Gregory D. Schuler, Making effective use of human genomic sequence data Trends in Genetics. ,vol. 15, pp. 284- 286 ,(1999) , 10.1016/S0168-9525(99)01762-X
Kim D. Pruitt, Kenneth S. Katz, Hugues Sicotte, Donna R. Maglott, Introducing RefSeq and LocusLink: curated human genome resources at the NCBI Trends in Genetics. ,vol. 16, pp. 44- 47 ,(2000) , 10.1016/S0168-9525(99)01882-X
Elspeth A Bruford, Bryony Braschi, Paul Denny, Tamsin EM Jones, Ruth L Seal, Susan Tweedie, Guidelines for human gene nomenclature. Genomics. ,vol. 79, pp. 464- 470 ,(2002) , 10.1006/GENO.2002.6748
S Altschula, Warren Gisha, Webb Millerb, E Meyersc, D Lipmana, None, Basic Local Alignment Search Tool Journal of Molecular Biology. ,vol. 215, pp. 403- 410 ,(1990) , 10.1016/S0022-2836(05)80360-2