Protein-Protein Docking: Are We There Yet?
作者： Horia Jalily Hasani , Khaled H. Barakat
DOI: 10.4018/978-1-5225-0115-2.CH007
关键词:
摘要:
sci-hub.st 参考文章(104)
Gergő Gógl, Kyle D. Schneider, Brian J. Yeh, Nashida Alam, Alex N. Nguyen Ba, Alan M. Moses, Csaba Hetényi, Attila Reményi, Eric L. Weiss, The Structure of an NDR/LATS Kinase–Mob Complex Reveals a Novel Kinase–Coactivator System and Substrate Docking Mechanism PLOS Biology. ,vol. 13, pp. e1002146- ,(2015) , 10.1371/JOURNAL.PBIO.1002146
Dina Duhovny, Ruth Nussinov, Haim J Wolfson, None, Efficient Unbound Docking of Rigid Molecules workshop on algorithms in bioinformatics. pp. 185- 200 ,(2002) , 10.1007/3-540-45784-4_14
David R. Hall, Sandor Vajda, Dima Kozakov, Dmitri Beglov, Tanggis Bohnuud, Scott E. Mottarella, Bing Xia, How good is automated protein docking Proteins. ,vol. 81, pp. 2159- 2166 ,(2013) , 10.1002/PROT.24403
Richard M. Jackson, Henry A. Gabb, Michael J.E. Sternberg, RAPID REFINEMENT OF PROTEIN INTERFACES INCORPORATING SOLVATION : APPLICATION TO THE DOCKING PROBLEM Journal of Molecular Biology. ,vol. 276, pp. 265- 285 ,(1998) , 10.1006/JMBI.1997.1519
Graham R. Smith, Michael J.E. Sternberg, Prediction of protein-protein interactions by docking methods Current Opinion in Structural Biology. ,vol. 12, pp. 28- 35 ,(2002) , 10.1016/S0959-440X(02)00285-3
Shoshana J Wodak, Raúl Méndez, Prediction of protein–protein interactions: the CAPRI experiment, its evaluation and implications Current Opinion in Structural Biology. ,vol. 14, pp. 242- 249 ,(2004) , 10.1016/J.SBI.2004.02.003
Mattia Pedotti, Luca Simonelli, Elsa Livoti, Luca Varani, Computational Docking of Antibody-Antigen Complexes, Opportunities and Pitfalls Illustrated by Influenza Hemagglutinin International Journal of Molecular Sciences. ,vol. 12, pp. 226- 251 ,(2011) , 10.3390/IJMS12010226
Fan Jiang, Sung-Hou Kim, “Soft docking”: Matching of molecular surface cubes Journal of Molecular Biology. ,vol. 219, pp. 79- 102 ,(1991) , 10.1016/0022-2836(91)90859-5
Adrian H. Elcock, David Sept, J. Andrew McCammon, Computer Simulation of Protein−Protein Interactions Journal of Physical Chemistry B. ,vol. 105, pp. 1504- 1508 ,(2001) , 10.1021/JP003602D
Shide Liang, Song Liu, Chi Zhang, Yaoqi Zhou, A simple reference state makes a significant improvement in near‐native selections from structurally refined docking decoys Proteins. ,vol. 69, pp. 244- 253 ,(2007) , 10.1002/PROT.21498