Analysis of F8 mRNA in haemophilia A patients with silent mutations or presumptive splice site mutations.

作者: M. A. Zimmermann , A. Gehrig , J. Oldenburg , C. R. Müller , S. Rost

DOI: 10.1111/HAE.12039

关键词:

摘要: Summary Mutation screenings in haemophilia A (HA) patients identified a great variety of mutations the factor VIII gene (F8): intron 22 or 1 inversions, missense mutations, nonsense small large deletions, insertions, duplications and splice site mutations. Mutations which do not result amino acid substitutions (silent mutations) intronic variants located outside consensus sequences cannot be easily classified as causative for HA. In these cases, special prediction software algorithms are applied to estimate their impact on splicing. Here, we present mRNA analysis novel F8 with possible splicing four HA silent seven close within sequences. Seven eleven examined vitro could shown have an effect results were compared silico predictions. addition, validate Alamut v2.0 (Interactive Biosoftware), published analyses prediction. general, tools good accordance experimental analyses, but fundamental discrepancy between was obtained some cases. conclusion, this study shows that functional classification potential should only rely software, rather based experiments.

参考文章(34)
Francisco Vidal, Elisenda Farssac, Carme Altisent, Lluís Puig, Dominique Gallardo, Rapid hemophilia A molecular diagnosis by a simple DNA sequencing procedure: identification of 14 novel mutations. Thrombosis and Haemostasis. ,vol. 85, pp. 580- 583 ,(2001) , 10.1055/S-0037-1615637
O El-Maarri, C Klein, J Junen, J Schröder, CR Müller, J Oldenburg, None, Splice Site Mutations Effect on the F8 mRNA Splicing 36th Hemophilia Symposium Hamburg 2005. pp. 291- 294 ,(2007) , 10.1007/978-3-540-36715-4_56
Bahar Taneri, Esra Asilmaz, Terry Gaasterland, Biomedical impact of splicing mutations revealed through exome sequencing. Molecular Medicine. ,vol. 18, pp. 314- 319 ,(2012) , 10.2119/MOLMED.2011.00126
G. CASTAMAN, S. H. GIACOMELLI, M. E. MANCUSO, S. SANNA, E. SANTAGOSTINO, F. RODEGHIERO, F8 mRNA studies in haemophilia A patients with different splice site mutations. Haemophilia. ,vol. 16, pp. 786- 790 ,(2010) , 10.1111/J.1365-2516.2010.02250.X
J. P. Gau, H. C. Hsu, W. K. Chau, C. H. Ho, A novel splicing acceptor mutation of the factor VIII gene producing skipping of exon 25 Annals of Hematology. ,vol. 82, pp. 175- 177 ,(2003) , 10.1007/S00277-002-0592-Y
Hagop Youssoufian, Haig H. Kazazian, Achyut Patel, Sophia Aronis, George Tsiftis, Leon W. Hoyer, Stylianos E. Antonarakis, Mild hemophilia A associated with a cryptic donor splice site mutation in intron 4 of the factor VIII gene Genomics. ,vol. 2, pp. 32- 36 ,(1988) , 10.1016/0888-7543(88)90106-1
Arupa Ganguly, Tanya Dunbar, Peiqin Chen, Lynn Godmilow, Tapan Ganguly, Exon skipping caused by an intronic insertion of a young Alu Yb9 element leads to severe hemophilia A Human Genetics. ,vol. 113, pp. 348- 352 ,(2003) , 10.1007/S00439-003-0986-5
R.B. DARNELL, Developing Global Insight into RNA Regulation Cold Spring Harbor Symposia on Quantitative Biology. ,vol. 71, pp. 321- 327 ,(2006) , 10.1101/SQB.2006.71.002
B. D. M. Theophilus, M. S. Enayat, M. D. Williams, F. G. H. Hill, Site and type of mutations in the factor VIII gene in patients and carriers of haemophilia A. Haemophilia. ,vol. 7, pp. 381- 391 ,(2001) , 10.1046/J.1365-2516.2001.00528.X
Peter D. Stenson, Edward V. Ball, Matthew Mort, Andrew D. Phillips, Jacqueline A. Shiel, Nick S.T. Thomas, Shaun Abeysinghe, Michael Krawczak, David N. Cooper, Human Gene Mutation Database (HGMD): 2003 update. Human Mutation. ,vol. 21, pp. 577- 581 ,(2003) , 10.1002/HUMU.10212