Development and characterization of microsatellite markers in the fungus Antrodia cinnamomea from dbEST database
作者： Selvaraju Kanagarajan , Saraladevi Muthusamy , Emily Chin-Fun Chen , Hsin-Sheng Tsay
DOI: 10.1007/S10592-008-9765-0
关键词:
摘要: We developed and characterized 8 polymorphic microsatellite loci or simple sequence repeats from the expressed tags database of medicinal fungus, Antrodia cinnamomea. Variability was assessed in a panel 23 strains collected various regions Taiwan. The number alleles per locus ranged two to seven with an average 4.375 locus. observed expected heterozygosity values 0.130 0.783 0.122 0.809, respectively. No significant Hardy–Weinberg equilibrium detected (P < 0.01) at all loci. EST-SSR markers present study can be used for strain identification population genetic studies A.
springer.com
cabdirect.org
sci-hub.se 参考文章(12)
Zhen-Ming Lu, Wen-Yi Tao, Xi-Liang Zou, Hui-Zi Fu, Zong-Hua Ao, Protective effects of mycelia of Antrodia camphorata and Armillariella tabescens in submerged culture against ethanol-induced hepatic toxicity in rats. Journal of Ethnopharmacology. ,vol. 110, pp. 160- 164 ,(2007) , 10.1016/J.JEP.2006.09.029
Norio Nakamura, Akiko Hirakawa, Jiang-Jing Gao, Hiroko Kakuda, Motoo Shiro, Yasuhiro Komatsu, Chia-chin Sheu, Masao Hattori, Five new maleic and succinic acid derivatives from the mycelium of Antrodia camphorata and their cytotoxic effects on LLC tumor cell line. Journal of Natural Products. ,vol. 67, pp. 46- 48 ,(2004) , 10.1021/NP030293K
Hua-Hsien Chiu, Phylogenetic analysis of Antrodia species and Antrodia camphorata inferred from internal transcribed spacer region. Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology. ,vol. 91, pp. 267- 276 ,(2007) , 10.1007/S10482-006-9116-4
Michael J. Thomson, Endang M. Septiningsih, Fatimah Suwardjo, Tri J. Santoso, Tiur S. Silitonga, Susan R. McCouch, Genetic diversity analysis of traditional and improved Indonesian rice (Oryza sativa L.) germplasm using microsatellite markers. Theoretical and Applied Genetics. ,vol. 114, pp. 559- 568 ,(2007) , 10.1007/S00122-006-0457-1
A. Untergasser, H. Nijveen, X. Rao, T. Bisseling, R. Geurts, J. A.M. Leunissen, Primer3Plus, an enhanced web interface to Primer3. Nucleic Acids Research. ,vol. 35, pp. 71- 74 ,(2007) , 10.1093/NAR/GKM306
Yen-ying WU, Chin-chu CHEN, Charng-cherng CHYAU, Sin-yi CHUNG, Yi-wen LIU, Modulation of inflammation-related genes of polysaccharides fractionated from mycelia of medicinal basidiomycete Antrodia camphorata. Acta Pharmacologica Sinica. ,vol. 28, pp. 258- 267 ,(2007) , 10.1111/J.1745-7254.2007.00500.X
K. Liu, S. V. Muse, PowerMarker: an integrated analysis environment for genetic marker analysis Bioinformatics. ,vol. 21, pp. 2128- 2129 ,(2005) , 10.1093/BIOINFORMATICS/BTI282
A. Masoudi-Nejad, K. Tonomura, S. Kawashima, Y. Moriya, M. Suzuki, M. Itoh, M. Kanehisa, T. Endo, S. Goto, EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments Nucleic Acids Research. ,vol. 34, pp. 459- 462 ,(2006) , 10.1093/NAR/GKL066
K. Selvaraju, P. Shanmugasundaram, S. Mohankumar, M. Asaithambi, R. Balasaraswathi, Detection of quantitative trait locus for leaffolder (Cnaphalocrocis medinalis (Guenee)) resistance in rice on linkage group 1 based on damage score and flag leaf width Euphytica. ,vol. 157, pp. 35- 43 ,(2007) , 10.1007/S10681-007-9394-6
S. B. Mudunuri, H. A. Nagarajaram, IMEx: Imperfect Microsatellite Extractor Bioinformatics. ,vol. 23, pp. 1181- 1187 ,(2007) , 10.1093/BIOINFORMATICS/BTM097