Semi-automated selection of cryo-EM particles in RELION-1.3.

作者: Sjors H.W. Scheres

DOI: 10.1016/J.JSB.2014.11.010

关键词:

摘要: The selection of particles suitable for high-resolution cryo-EM structure determination from noisy micrographs may represent a tedious and time-consuming step. Here, semi-automated particle procedure is presented that has been implemented within the open-source software RELION. At heart lies fully CTF-corrected template-based picking algorithm, which supplemented by fast sorting algorithm reference-free 2D class averaging to remove false positives. With only limited user-interaction, proposed yields results are comparable manual selection. Together with an improved graphical user interface, these developments further contribute turning RELION stand-alone refinement program into convenient image processing pipeline entire single-particle approach.

参考文章(40)
Sjors H.W. Scheres, Classification of structural heterogeneity by maximum-likelihood methods. Methods in Enzymology. ,vol. 482, pp. 295- 320 ,(2010) , 10.1016/S0076-6879(10)82012-9
Peilong Lu, Xiao-chen Bai, Dan Ma, Tian Xie, Chuangye Yan, Linfeng Sun, Guanghui Yang, Yanyu Zhao, Rui Zhou, Sjors H. W. Scheres, Yigong Shi, Three-dimensional structure of human γ-secretase Nature. ,vol. 512, pp. 166- 170 ,(2014) , 10.1038/NATURE13567
Erhu Cao, Maofu Liao, Yifan Cheng, David Julius, TRPV1 structures in distinct conformations reveal activation mechanisms Nature. ,vol. 504, pp. 113- 118 ,(2013) , 10.1038/NATURE12823
G. McMullan, S. Chen, R. Henderson, A.R. Faruqi, Detective quantum efficiency of electron area detectors in electron microscopy Ultramicroscopy. ,vol. 109, pp. 1126- 1143 ,(2009) , 10.1016/J.ULTRAMIC.2009.04.002
Sydney R. Hall, The STAR file: a new format for electronic data transfer and archiving Journal of Chemical Information and Computer Sciences. ,vol. 31, pp. 326- 333 ,(1991) , 10.1021/CI00002A020
Nikolaus Grigorieff, Stephen C Harrison, Near-atomic resolution reconstructions of icosahedral viruses from electron cryo-microscopy Current Opinion in Structural Biology. ,vol. 21, pp. 265- 273 ,(2011) , 10.1016/J.SBI.2011.01.008
Melody G. Campbell, Anchi Cheng, Axel F. Brilot, Arne Moeller, Dmitry Lyumkis, David Veesler, Junhua Pan, Stephen C. Harrison, Clinton S. Potter, Bridget Carragher, Nikolaus Grigorieff, Movies of Ice-Embedded Particles Enhance Resolution in Electron Cryo-Microscopy Structure. ,vol. 20, pp. 1823- 1828 ,(2012) , 10.1016/J.STR.2012.08.026
I. S. Fernandez, X.-C. Bai, T. Hussain, A. C. Kelley, J. R. Lorsch, V. Ramakrishnan, S. H. W. Scheres, Molecular architecture of a eukaryotic translational initiation complex. Science. ,vol. 342, pp. 1240585- 1240585 ,(2013) , 10.1126/SCIENCE.1240585
William V. Nicholson, Robert M. Glaeser, Review: Automatic Particle Detection in Electron Microscopy Journal of Structural Biology. ,vol. 133, pp. 90- 101 ,(2001) , 10.1006/JSBI.2001.4348