Development and Evaluation of Novel Real-Time Reverse Transcription-PCR Assays with Locked Nucleic Acid Probes Targeting Leader Sequences of Human-Pathogenic Coronaviruses

作者: Jasper Fuk-Woo Chan , Garnet Kwan-Yue Choi , Alan Ka-Lun Tsang , Kah-Meng Tee , Ho-Yin Lam

DOI: 10.1128/JCM.01224-15

关键词:

摘要: Based on findings in small RNA-sequencing (Seq) data analysis, we developed highly sensitive and specific real-time reverse transcription (RT)-PCR assays with locked nucleic acid probes targeting the abundantly expressed leader sequences of Middle East respiratory syndrome coronavirus (MERS-CoV) other human coronaviruses. Analytical clinical evaluations showed their noninferiority to a commercial multiplex PCR test for detection these

参考文章(41)
Krzysztof Pyrc, Maarten F Jebbink, Ben Berkhout, Lia van der Hoek, Genome structure and transcriptional regulation of human coronavirus NL63 Virology Journal. ,vol. 1, pp. 7- 7 ,(2004) , 10.1186/1743-422X-1-7
V M Corman, I Eckerle, T Bleicker, A Zaki, O Landt, M Eschbach-Bludau, S van Boheemen, R Gopal, M Ballhause, T M Bestebroer, D Muth, M A Müller, J F Drexler, M Zambon, A D Osterhaus, R M Fouchier, C Drosten, Detection of a novel human coronavirus by real-time reverse-transcription polymerase chain reaction Eurosurveillance. ,vol. 17, pp. 20285- ,(2012) , 10.2807/ESE.17.39.20285-EN
V M Corman, M A Müller, U Costabel, J Timm, T Binger, B Meyer, P Kreher, E Lattwein, M Eschbach-Bludau, A Nitsche, T Bleicker, O Landt, B Schweiger, J F Drexler, A D Osterhaus, B L Haagmans, U Dittmer, F Bonin, T Wolff, C Drosten, Assays for laboratory confirmation of novel human coronavirus (hCoV-EMC) infections. Eurosurveillance. ,vol. 17, pp. 20334- ,(2012) , 10.2807/ESE.17.49.20334-EN
Dong Yang, Julian L. Leibowitz, The structure and functions of coronavirus genomic 3′ and 5′ ends Virus Research. ,vol. 206, pp. 120- 133 ,(2015) , 10.1016/J.VIRUSRES.2015.02.025
Iris W.S. Li, Kelvin K.W. To, Bone S.F. Tang, Kwok-Hung Chan, Chee-Kin Hui, Vincent C.C. Cheng, Kwok-Yung Yuen, Human metapneumovirus infection in an immunocompetent adult presenting as mononucleosis-like illness Journal of Infection. ,vol. 56, pp. 389- 392 ,(2008) , 10.1016/J.JINF.2008.03.005
IWS Li, KH Chan, KWK To, SSY Wong, PL Ho, SKP Lau, PCY Woo, HW Tsoi, JFW Chan, VCC Cheng, BJ Zheng, H Chen, KY Yuen, None, Differential susceptibility of different cell lines to swine-origin influenza A H1N1, seasonal human influenza A H1N1, and avian influenza A H5N1 viruses Journal of Clinical Virology. ,vol. 46, pp. 325- 330 ,(2009) , 10.1016/J.JCV.2009.09.013
KH Chan, MK Yan, KKW To, SK Lau, PC Woo, VCC Cheng, WS Li, JFW Chan, H Tse, KY Yuen, None, Use of the human colorectal adenocarcinoma (Caco-2) cell line for isolating respiratory viruses from nasopharyngeal aspirates. Journal of Medical Virology. ,vol. 85, pp. 874- 879 ,(2013) , 10.1002/JMV.23538
Susanna K.P. Lau, Xiao-Yan Che, Patrick C.Y. Woo, Beatrice H.L. Wong, Vincent C.C. Cheng, Gibson K.S. Woo, Ivan F.N. Hung, Rosana W.S. Poon, Kwok-Hung Chan, J.S. Malik Peiris, Kwok-Yung Yuen, SARS coronavirus detection methods. Emerging Infectious Diseases. ,vol. 11, pp. 1108- 1111 ,(2005) , 10.3201/EID1107.041045
Michael Petersen, Jesper Wengel, LNA: a versatile tool for therapeutics and genomics Trends in Biotechnology. ,vol. 21, pp. 74- 81 ,(2003) , 10.1016/S0167-7799(02)00038-0
Haruki Komatsu, Motoki Imura, Akihiko Tateno, Tomoyuki Tsunoda, Ayano Inui, Tsuyoshi Sogo, Tomoo Fujisawa, Successful use of saliva without DNA extraction for detection of macrolide-resistant Mycoplasma pneumoniae DNA in children using LNA probe-based real-time PCR Journal of Infection and Chemotherapy. ,vol. 19, pp. 1087- 1092 ,(2013) , 10.1007/S10156-013-0630-9