eggNOG v4.0: nested orthology inference across 3686 organisms
作者： Sean Powell , Kristoffer Forslund , Damian Szklarczyk , Kalliopi Trachana , Alexander Roth
DOI: 10.1093/NAR/GKT1253
关键词:
摘要: … This effort essentially extends that of the manually curated COGs/KOGs/arCOGs (2,16,17) databases, and is matched in scope by only a few other resources, most notably KEGG-OC (18…
oxfordjournals.org
oup.com
sci-hub.se 参考文章(69)
John C. Wootton, Scott Federhen, Analysis of compositionally biased regions in sequence databases. Methods in Enzymology. ,vol. 266, pp. 554- 571 ,(1996) , 10.1016/S0076-6879(96)66035-2
Robert C Edgar, MUSCLE: a multiple sequence alignment method with reduced time and space complexity BMC Bioinformatics. ,vol. 5, pp. 113- 113 ,(2004) , 10.1186/1471-2105-5-113
William R. Pearson, Rapid and Sensitive Sequence Comparison with FASTP and FASTA. Methods in Enzymology. ,vol. 183, pp. 63- 98 ,(1990) , 10.1016/0076-6879(90)83007-V
Hedvig Tordai, Alinda Nagy, Krisztina Farkas, László Bányai, László Patthy, Modules, multidomain proteins and organismic complexity. FEBS Journal. ,vol. 272, pp. 5064- 5078 ,(2005) , 10.1111/J.1742-4658.2005.04917.X
Mao Tanabe, Minoru Kanehisa, Using the KEGG Database Resource Current protocols in human genetics. ,vol. 38, ,(2005) , 10.1002/0471250953.BI0112S38
Eugene V Koonin, L Aravind, Alexey S Kondrashov, The Impact of Comparative Genomics on Our Understanding of Evolution Cell. ,vol. 101, pp. 573- 576 ,(2000) , 10.1016/S0092-8674(00)80867-3
Daniel A. Dalquen, Adrian M. Altenhoff, Gaston H. Gonnet, Christophe Dessimoz, The Impact of Gene Duplication, Insertion, Deletion, Lateral Gene Transfer and Sequencing Error on Orthology Inference: A Simulation Study PLoS ONE. ,vol. 8, pp. e56925- ,(2013) , 10.1371/JOURNAL.PONE.0056925
MV Sizova, T Hohmann, A Hazen, BJ Paster, SR Halem, CM Murphy, NS Panikov, SS3255620 Epstein, None, New Approaches for Isolation of Previously Uncultivated Oral Bacteria Applied and Environmental Microbiology. ,vol. 78, pp. 194- 203 ,(2012) , 10.1128/AEM.06813-11
Eugene Koonin, Roman Tatusov, Michael Galperin, Mikhail Rozanov, David Lipman, A Genomic Perspective on Protein Families Science. ,vol. 278, pp. 631- 637 ,(1997) , 10.1126/SCIENCE.278.5338.631
Adrian M. Altenhoff, Christophe Dessimoz, Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods PLoS Computational Biology. ,vol. 5, pp. e1000262- ,(2009) , 10.1371/JOURNAL.PCBI.1000262