Distribution, Sequence Homology, and Homing of Group I Introns among T-even-like Bacteriophages EVIDENCE FOR RECENT TRANSFER OF OLD INTRONS

作者: Linus Sandegren , Britt-Marie Sjöberg

DOI: 10.1074/JBC.M400929200

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摘要: Self-splicing group I introns are being found in an increasing number of bacteriophages. Most contain open reading frame coding for a homing endo-nuclease that confers mobility to both the intron and endonuclease gene (HEG). The frequent occurrence intron/HEG has raised questions whether spread via horizontal transfer between phage populations. We have determined complete sequences known among T-even-like bacteriophages together with intron-containing genes td, nrdB, nrdD from phages without introns. A previously uncharacterized isolate, U5, is shown all three introns, only besides T4 "full set" these Sequence analysis td nrdB intronless provides evidence recent transmission occurred phages. fact several HEGs suffered deletions rendering them non-functional implies endonucleases no selective advantage rapidly degenerating probably dependent upon transmissions maintenance within Several can home closely related during mixed infections. However, efficiency varies on homology regions flanking insertion site. optional respective strongly affect homing. These findings give further insight into mechanisms propagation evolution

参考文章(55)
Jim D. Karam, John W. Drake, Molecular Biology of Bacteriophage T4 ,(1994)
M. Bryk, S.M. Quirk, J.E. Mueller, N. Loizos, C. Lawrence, M. Belfort, The td intron endonuclease I-TevI makes extensive sequence-tolerant contacts across the minor groove of its DNA target. The EMBO Journal. ,vol. 12, pp. 2141- 2149 ,(1993) , 10.1002/J.1460-2075.1993.TB05862.X
M Ohman, B M Sjöberg, P Young, M Q Xu, D A Shub, Intron-containing T4 bacteriophage gene sunY encodes an anaerobic ribonucleotide reductase. Journal of Biological Chemistry. ,vol. 269, pp. 20229- 20232 ,(1994) , 10.1016/S0021-9258(17)31980-4
B.M. Sjöberg, S. Hahne, C.Z. Mathews, C.K. Mathews, K.N. Rand, M.J. Gait, The bacteriophage T4 gene for the small subunit of ribonucleotide reductase contains an intron. The EMBO Journal. ,vol. 5, pp. 2031- 2036 ,(1986) , 10.1002/J.1460-2075.1986.TB04460.X
Richard L Russell, Robert J Huskey, PARTIAL EXCLUSION BETWEEN T-EVEN BACTERIOPHAGES; AN INCIPIENT GENETIC ISOLATION MECHANISM Genetics. ,vol. 78, pp. 989- 1014 ,(1974) , 10.1093/GENETICS/78.4.989
M. Sharma, R. L. Ellis, D. M. Hinton, Identification of a family of bacteriophage T4 genes encoding proteins similar to those present in group I introns of fungi and phage. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 89, pp. 6658- 6662 ,(1992) , 10.1073/PNAS.89.14.6658
M. S. Jurica, B. L. Stoddard, Homing endonucleases: structure, function and evolution. Cellular and Molecular Life Sciences. ,vol. 55, pp. 1304- 1326 ,(1999) , 10.1007/S000180050372
D. Bell-Pedersen, S. M. Quirk, M. Bryk, M. Belfort, I-TevI, the endonuclease encoded by the mobile td intron, recognizes binding and cleavage domains on its DNA target. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 88, pp. 7719- 7723 ,(1991) , 10.1073/PNAS.88.17.7719