ilastik: interactive machine learning for (bio)image analysis.
作者： Stuart Berg , Dominik Kutra , Thorben Kroeger , Christoph N Straehle , Bernhard X Kausler
DOI: 10.1038/S41592-019-0582-9
关键词:
摘要: We present ilastik, an easy-to-use interactive tool that brings machine-learning-based (bio) image analysis to end users without substantial computational expertise. It contains pre-defined workflows for image segmentation, object classification, counting and tracking. Users adapt the workflows to the problem at hand by interactively providing sparse training annotations for a nonlinear classifier. ilastik can process data in up to five dimensions (3D, time and number of channels). Its computational back end runs operations on-demand …
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sci-hub.se 参考文章(42)
C. N. Straehle, U. Köthe, G. Knott, F. A. Hamprecht, Carving: Scalable Interactive Segmentation of Neural Volume Electron Microscopy Images Lecture Notes in Computer Science. ,vol. 14, pp. 653- 660 ,(2011) , 10.1007/978-3-642-23623-5_82
Ullrich Koethe, Fred A. Hamprecht, Luca Fiaschi, Rahul Nair, Learning to count with regression forest and structured labels international conference on pattern recognition. pp. 2685- 2688 ,(2012)
DETLEV STALLING, MALTE WESTERHOFF, HANS-CHRISTIAN HEGE, Amira: A highly interactive system for visual data analysis The Visualization Handbook. pp. 749- 767 ,(2005) , 10.1016/B978-012387582-2/50040-X
Michael R. Berthold, Nicolas Cebron, Fabian Dill, Thomas R. Gabriel, Tobias Kötter, Thorsten Meinl, Peter Ohl, Christoph Sieb, Kilian Thiel, Bernd Wiswedel, KNIME: The Konstanz Information Miner 4th Annual Industrial Simulation Conference (ISC). pp. 319- 326 ,(2008) , 10.1007/978-3-540-78246-9_38
Natalya Korogod, Carl CH Petersen, Graham W Knott, Ultrastructural analysis of adult mouse neocortex comparing aldehyde perfusion with cryo fixation eLife. ,vol. 4, ,(2015) , 10.7554/ELIFE.05793
Thorsten Beier, Fred A Hamprecht, Jorg H Kappes, None, Fusion moves for correlation clustering computer vision and pattern recognition. pp. 3507- 3516 ,(2015) , 10.1109/CVPR.2015.7298973
Christoph-N Straehle, Ullrich Koethe, Graham Knott, Kevin Briggman, Winfried Denk, Fred A Hamprecht, None, Seeded watershed cut uncertainty estimators for guided interactive segmentation computer vision and pattern recognition. pp. 765- 772 ,(2012) , 10.1109/CVPR.2012.6247747
Bjoern Andres, Jörg H Kappes, Thorsten Beier, Ullrich Köthe, Fred A Hamprecht, None, Probabilistic image segmentation with closedness constraints international conference on computer vision. pp. 2611- 2618 ,(2011) , 10.1109/ICCV.2011.6126550
Pierre Geurts, Alexandre Irrthum, Louis Wehenkel, Supervised learning with decision tree-based methods in computational and systems biology Molecular BioSystems. ,vol. 5, pp. 1593- 1605 ,(2009) , 10.1039/B907946G
Melissa Linkert, Curtis T. Rueden, Chris Allan, Jean-Marie Burel, Will Moore, Andrew Patterson, Brian Loranger, Josh Moore, Carlos Neves, Donald MacDonald, Aleksandra Tarkowska, Caitlin Sticco, Emma Hill, Mike Rossner, Kevin W. Eliceiri, Jason R. Swedlow, Metadata matters: access to image data in the real world Journal of Cell Biology. ,vol. 189, pp. 777- 782 ,(2010) , 10.1083/JCB.201004104