Assemblages of anoxygenic phototrophic bacteria in tank bromeliads exhibit a host-specific signature
François Enault , Bruno Corbara , Régis Céréghino , Christian Jeanthon
Journal of Ecology
2021
Discovery of High Abundances of Aster-Like Nanoparticles in Pelagic Environments: Characterization and Dynamics
Jonathan Colombet , Hermine Billard , Bernard Viguès , Stéphanie Balor
Frontiers in Microbiology 10 2376
3
2019
Genomic characteristics and environmental distributions of the uncultivated Far-T4 phages
Simon Roux , François Enault , Viviane Ravet , Olivier Pereira
Frontiers in Microbiology 6 199 -199
15
2015
Bioinformatics Meets Virology : The European Virus Bioinformatics Center's Second Annual Meeting
Bashar Ibrahim , Ksenia Arkhipova , Arno Andeweg , Susana Posada-Céspedes
Viruses 10 ( 5) 256
5
2018
Minimum information about an uncultivated virus genome (MIUVIG)
J Rodney Brister , Arvind Varsani , Clara Amid , Ramy K Aziz
Nature Biotechnology 37 ( 1) 29 -37
290
2019
Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences
Simon Roux , Mart Krupovic , Didier Debroas , Patrick Forterre
Open Biology 3 ( 12) 130160 -130160
124
2013
Analysis of Spounaviruses as a Case Study for the Overdue Reclassification of Tailed Phages
Pakorn Aiewsakun , Johannes Wittmann , Igor Tolstoy , J Rodney Brister
Systematic Biology 69 ( 1) 110 -123
88
2020
WIsH: who is the host? Predicting prokaryotic hosts from metagenomic phage contigs
Clovis Galiez , Matthias Siebert , François Enault , Jonathan Vincent
Bioinformatics 33 ( 19) 3113 -3114
75
2017
Metavir: a web server dedicated to virome analysis
Simon Roux , Michaël Faubladier , Antoine Mahul , Nils Paulhe
Bioinformatics 27 ( 21) 3074 -3075
127
2011
Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses
François Enault , Arnaud Briet , Léa Bouteille , Simon Roux
The ISME Journal 11 ( 1) 237 -247
277
2017
Biogeographic patterns of aerobic anoxygenic phototrophic bacteria reveal an ecological consistency of phylogenetic clades in different oceanic biomes.
Anne-Catherine Lehours , François Enault , Dominique Boeuf , Christian Jeanthon
Scientific Reports 8 ( 1) 4105
7
2018
Evolution and Diversity of the Microviridae Viral Family through a Collection of 81 New Complete Genomes Assembled from Virome Reads
Simon Roux , Mart Krupovic , Axel Poulet , Didier Debroas
PLoS ONE 7 ( 7) e40418
118
2012
Metavir 2: new tools for viral metagenome comparison and assembled virome analysis
Simon Roux , Jeremy Tournayre , Antoine Mahul , Didier Debroas
BMC Bioinformatics 15 ( 1) 76 -76
233
2014
Phydbac "Gene Function Predictor" : a gene annotation tool based on genomic context analysis
François Enault , Karsten Suhre , Jean-Michel Claverie
BMC Bioinformatics 6 ( 1) 247 -247
58
2005
Comparison of 16S rRNA and protein-coding genes as molecular markers for assessing microbial diversity (Bacteria and Archaea) in ecosystems
Simon Roux , François Enault , Gisè Bronner , Didier Debroas
FEMS Microbiology Ecology 78 ( 3) 617 -628
71
2011
Metagenomic approach studying the taxonomic and functional diversity of the bacterial community in a mesotrophic lake (Lac du Bourget – France)
Didier Debroas , Jean-François Humbert , François Enault , Gisèle Bronner
Environmental Microbiology 11 ( 9) 2412 -2424
143
2009
Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses
Simon Roux , François Enault , Gisèle Bronner , Daniel Vaulot
Nature Communications 4 ( 1) 2700
70
2013
Unveiling Crucivirus Diversity by Mining Metagenomic Data
Ignacio de La Higuera , George W Kasun , Ellis L Torrance , Alyssa A Pratt
bioRxiv
1
2020
Abolishment of morphology-based taxa and change to binomial species names: 2022 taxonomy update of the ICTV bacterial viruses subcommittee
Dann Turner , Andrey N Shkoporov , Cédric Lood , Andrew D Millard
Archives of Virology 168 ( 2) 74
1
2023
PHROG: families of prokaryotic virus proteins clustered using remote homology
Paul Terzian , Eric Olo Ndela , Clovis Galiez , Julien Lossouarn
NAR Genomics and Bioinformatics 3 ( 3) lqab067
47
2021