Bioinformatics Meets Virology : The European Virus Bioinformatics Center's Second Annual Meeting
作者： Bashar Ibrahim , Ksenia Arkhipova , Arno Andeweg , Susana Posada-Céspedes , François Enault
DOI: 10.3390/V10050256
关键词: Virology 、 Political science 、 Center (algebra and category theory) 、 Ecology (disciplines) 、 Best practice 、 Research findings 、 Bioinformatics 、 Genomic data
摘要: The Second Annual Meeting of the European Virus Bioinformatics Center (EVBC), held in Utrecht, Netherlands, focused on computational approaches virology, with topics including (but not limited to) virus discovery, diagnostics, (meta-)genomics, modeling, epidemiology, molecular structure, evolution, and viral ecology. goals were threefold: (i) to bring together virologists bioinformaticians from across academic, industrial, professional, training sectors share best practice; (ii) provide a meaningful interactive scientific environment promote discussion collaboration between students, postdoctoral fellows, both new established investigators; (iii) inspire suggest research directions questions. Approximately 120 researchers around world attended EVBC this year, 15 renowned international speakers. This report presents an overview developments novel findings that emerged during meeting.
core.ac.uk
narcis.nl参考文章(38)
Bas E. Dutilh, Noriko Cassman, Katelyn McNair, Savannah E. Sanchez, Genivaldo G. Z. Silva, Lance Boling, Jeremy J. Barr, Daan R. Speth, Victor Seguritan, Ramy K. Aziz, Ben Felts, Elizabeth A. Dinsdale, John L. Mokili, Robert A. Edwards, A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes Nature Communications. ,vol. 5, pp. 4498- 4498 ,(2014) , 10.1038/NCOMMS5498
Nicholas J. Croucher, Andrew J. Page, Thomas R. Connor, Aidan J. Delaney, Jacqueline A. Keane, Stephen D. Bentley, Julian Parkhill, Simon R. Harris, Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins. Nucleic Acids Research. ,vol. 43, ,(2015) , 10.1093/NAR/GKU1196
Roman Biek, Oliver G. Pybus, James O. Lloyd-Smith, Xavier Didelot, Measurably evolving pathogens in the genomic era Trends in Ecology and Evolution. ,vol. 30, pp. 306- 313 ,(2015) , 10.1016/J.TREE.2015.03.009
Xavier Didelot, Daniel J. Wilson, ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes PLOS Computational Biology. ,vol. 11, pp. e1004041- ,(2015) , 10.1371/JOURNAL.PCBI.1004041
Remco Bouckaert, Joseph Heled, Denise Kühnert, Tim Vaughan, Chieh-Hsi Wu, Dong Xie, Marc A. Suchard, Andrew Rambaut, Alexei J. Drummond, BEAST 2: A Software Platform for Bayesian Evolutionary Analysis PLoS Computational Biology. ,vol. 10, pp. e1003537- ,(2014) , 10.1371/JOURNAL.PCBI.1003537
Jonathan E Dickerson, John W Pinney, David L Robertson, The biological context of HIV-1 host interactions reveals subtle insights into a system hijack BMC Systems Biology. ,vol. 4, pp. 80- 80 ,(2010) , 10.1186/1752-0509-4-80
Oyebode J. Oyeyemi, Oluwafemi Davies, David L. Robertson, Jean-Marc Schwartz, A logical model of HIV-1 interactions with the T-cell activation signalling pathway. Bioinformatics. ,vol. 31, pp. 1075- 1083 ,(2015) , 10.1093/BIOINFORMATICS/BTU787
Roger G. Ptak, William Fu, Brigitte E. Sanders-Beer, Jonathan E. Dickerson, John W. Pinney, David L. Robertson, Mikhail N. Rozanov, Kenneth S. Katz, Donna R. Maglott, Kim D. Pruitt, Carl W. Dieffenbach, Cataloguing the HIV type 1 human protein interaction network AIDS Research and Human Retroviruses. ,vol. 24, pp. 1497- 1502 ,(2008) , 10.1089/AID.2008.0113
Nicholas J Croucher, Simon R Harris, Christophe Fraser, Michael A Quail, John Burton, Mark Van Der Linden, Lesley McGee, Anne Von Gottberg, Jae Hoon Song, Kwan Soo Ko, Bruno Pichon, Stephen Baker, Christopher M Parry, Lotte M Lambertsen, Dea Shahinas, Dylan R Pillai, Timothy J Mitchell, Gordon Dougan, Alexander Tomasz, Keith P Klugman, Julian Parkhill, William P Hanage, Stephen D Bentley, Rapid Pneumococcal Evolution in Response to Clinical Interventions Science. ,vol. 331, pp. 430- 434 ,(2011) , 10.1126/SCIENCE.1198545
Lars Steinbrück, Alice Carolyn McHardy, Inference of Genotype–Phenotype Relationships in the Antigenic Evolution of Human Influenza A (H3N2) Viruses PLoS Computational Biology. ,vol. 8, pp. e1002492- ,(2012) , 10.1371/JOURNAL.PCBI.1002492