Evguenia Kopylova
机构: Host-microbiome data analysis | Managing Director, Clarity Genomics
每年引用次数
引用次数
引用: 8,354
H-指数: 13
I10-指数 : 14
出版物: 27
Algorithmes bio-informatiques pour l’analyse de données de séquençage à haut débit
Evguenia Kopylova
Lille 1
2013
SortMeRNA 2: ribosomal RNA classification for taxonomic assignation
Hélène Touzet , Mikaël Salson , Laurent Noé , Evguenia Kopylova
Workshop on Recent Computational Advances in Metagenomics, ECCB 2014
5
2014
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0.
Francesco Asnicar , Andrew Maltez Thomas , Francesco Beghini , Claudia Mengoni
Nature Communications 11 ( 1) 2500
223
2020
A communal catalogue reveals Earth’s multiscale microbial diversity
Luke R Thompson , Jon G Sanders , Daniel McDonald , Amnon Amir
Nature 551 ( 7681) 457 -463
1,682
2017
SortMeRNA: Fast and accurate filtering of ribosomal RNAs in metatranscriptomic data.
Evguenia Kopylova , Laurent Noé , Hélène Touzet
Bioinformatics 28 ( 24) 3211 -3217
1,036
2012
Reply to Wang and Chen: An ancient origin of magnetotactic bacteria.
Wei Lin , Greig A. Paterson , Qiyun Zhu , Yinzhao Wang
Proceedings of the National Academy of Sciences of the United States of America 114 ( 26) 201707301
9
2017
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea.
Qiyun Zhu , Uyen Mai , Wayne Pfeiffer , Stefan Janssen
Nature Communications 10 ( 1) 5477
161
2019
Origin of microbial biomineralization and magnetotaxis during the Archean.
Wei Lin , Greig A. Paterson , Qiyun Zhu , Yinzhao Wang
Proceedings of the National Academy of Sciences of the United States of America 114 ( 9) 2171 -2176
47
2017
Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity.
Yan He , J. Gregory Caporaso , Xiao-Tao Jiang , Hua-Fang Sheng
Microbiome 3 ( 1) 20 -20
161
2015
Open-Source Sequence Clustering Methods Improve the State Of the Art
Evguenia Kopylova , Jose A. Navas-Molina , Céline Mercier , Zhenjiang Zech Xu
mSystems 1 ( 1)
137
2016
Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
Amnon Amir , Daniel McDonald , Jose A. Navas-Molina , Evguenia Kopylova
mSystems 2 ( 2)
1,033
2017
Microbiome analyses of blood and tissues suggest cancer diagnostic approach
Gregory D. Poore , Evguenia Kopylova , Qiyun Zhu , Carolina Carpenter
Nature 579 ( 7800) 567 -574
481
2020
The three squares lemma revisited
Evguenia Kopylova , W.F. Smyth
Journal of Discrete Algorithms 11 ( 1) 3 -14
18
2012
A comparison of index-based lempel-Ziv LZ77 factorization algorithms
Anisa Al-Hafeedh , Maxime Crochemore , Lucian Ilie , Evguenia Kopylova
ACM Computing Surveys 45 ( 1) 1 -17
29
2012
A standardized, extensible framework for optimizing classification improves marker-gene taxonomic assignments
Nicholas A Bokulich , Jai Ram Rideout , Evguenia Kopylova , Evan Bolyen
PeerJ PrePrints 3 e934v2 -e934v2
34
2015
Reply to: caution regarding the specificities of pan-cancer microbial structure
Gregory D Sepich-Poore , Evguenia Kopylova , Qiyun Zhu , Carolina Carpenter
bioRxiv 2023.02. 10.528049 -2023.02. 10.528049
8
2023
Robustness of cancer microbiome signals over a broad range of methodological variation
Gregory D Sepich-Poore , Daniel McDonald , Evguenia Kopylova , Caitlin Guccione
Oncogene 1 -22
2
2024
Correction: Robustness of cancer microbiome signals over a broad range of methodological variation
Gregory D Sepich-Poore , Daniel McDonald , Evguenia Kopylova , Caitlin Guccione
Oncogene 43 ( 20) 1579 -1579
2024
Deciphering metatranscriptomic data
Evguenia Kopylova , Laurent Noé , Corinne Da Silva , Jean-Frédéric Berthelot
RNA Bioinformatics 279 -291
7
2015
B. infantis EVC001 is well-tolerated and improves human milk oligosaccharide utilization in preterm infants in the neonatal intensive care unit
Sarah Bajorek , Rebbeca M Duar , Maxwell Corrigan , Christa Matrone
Frontiers in Pediatrics 9 795970 -795970
8
2022
Rob Knight Qiyun Zhu Laurent Noé Helene Touzet Se Jin Song Gregory D. Sepich-Poore Sandip Pravin Patel Jessica L. Metcalf Tomasz Kościółek Stephen Wandro Serena Fraraccio Robert K. Heaton Sandrine Javorschi-Miller-Montgomery Carolina Carpenter Austin Swafford, PhD Daniel McDonald Zhenjiang Zech Xu Jose A Navas-Molina J Gregory Caporaso James T. Morton