Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host molecules
J.L. Baker , J.T. Morton , M. Dinis , R. Alverez
bioRxiv 804443
9
2019
Frequency calibration of A/D converter in software GPS receivers
L.L. Liou , D.M. Lin , J.B. Tsui , J. Schamus
international frequency control symposium 652 -659
1
2005
Quantifying Live Microbial Load in Human Saliva Samples over Time Reveals Stable Composition and Dynamic Load
Pedro Belda-Ferre , Karsten Zengler , Joanna Coker , Rob Knight
mSystems 6 ( 1)
14
2021
EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets.
Pieter C. Dorrestein , Pieter C. Dorrestein , Julia M. Gauglitz , Yoshiki Vázquez-Baeza
mSystems 6 ( 2)
2021
Learned Embeddings from Deep Learning to Visualize and Predict Protein Sets
Burkhard Rost , Sungroh Yoon , Seonwoo Min , Kevin K. Yang
Current Protocols 1 ( 5)
41
2021
Learning representations of microbe–metabolite interactions
James T. Morton , Alexander A. Aksenov , Louis Felix Nothias , James R. Foulds
Nature Methods 16 ( 12) 1306 -1314
169
2019
Reply to: Examining microbe-metabolite correlations by linear methods
James T. Morton , Daniel McDonald , Alexander A. Aksenov , Louis Felix Nothias
Nature Methods 18 ( 1) 40 -41
2021
Environmental radiation alters the gut microbiome of the bank vole Myodes glareolus
Anton Lavrinienko , Tapio Mappes , Eugene Tukalenko , Timothy A. Mousseau
The ISME Journal 12 ( 11) 2801 -2806
22
2018
Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes.
Katherine R. Amato , Jon G. Sanders , Se Jin Song , Michael Nute
The ISME Journal 13 ( 3) 576 -587
203
2019
Bringing the Dynamic Microbiome to Life with Animations
Yoshiki Vázquez-Baeza , Antonio Gonzalez , Larry Smarr , Daniel McDonald
Cell Host & Microbe 21 ( 1) 7 -10
37
2017
An Elegan(t) Screen for Drug-Microbe Interactions.
Alison Vrbanac , Justine W. Debelius , Lingjing Jiang , James T. Morton
Cell Host & Microbe 21 ( 5) 555 -556
1
2017
Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome
Tanja V Maier , Marianna Lucio , Lang Ho Lee , Nathan C VerBerkmoes
Mbio 8 ( 5)
214
2017
The Microbiome in Posttraumatic Stress Disorder and Trauma-Exposed Controls: An Exploratory Study.
Sian M.J. Hemmings , Stefanie Malan-Müller , Leigh L. van den Heuvel , Brittany A. Demmitt
Psychosomatic Medicine 79 ( 8) 936 -946
168
2017
Parkinson's disease and Parkinson's disease medications have distinct signatures of the gut microbiome
Erin M. Hill-Burns , Justine W. Debelius , James T. Morton , William T. Wissemann
Movement Disorders 32 ( 5) 739 -749
614
2017
Best practices for analysing microbiomes.
Rob Knight , Alison Vrbanac , Bryn C. Taylor , Alexander Aksenov
Nature Reviews Microbiology 16 ( 7) 410 -422
1,113
2018
MetaRiPPquest: A Peptidogenomics Approach for the Discovery of Ribosomally Synthesized and Post-translationally Modified Peptides
Hosein Mohimani , Alexey Gurevich , Kelsey L Alexander , C Benjamin Naman
bioRxiv 227504
4
2017
Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host molecules.
Jonathon L. Baker , James T. Morton , Márcia Dinis , Ruth Alvarez
Genome Research 31 ( 1) 64 -74
4
2021
Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data
Alexander A. Aksenov , Ivan Laponogov , Zheng Zhang , Sophie L. F. Doran
Nature Biotechnology 39 ( 2) 169 -173
67
2021
Red Sea SAR11 and Prochlorococcus Single-Cell Genomes Reflect Globally Distributed Pangenomes.
Luke R. Thompson , Mohamed F. Haroon , Ahmed A. Shibl , Matt J. Cahill
Applied and Environmental Microbiology 85 ( 13) 1
6
2019
Mass Spectrometry-Based Chemical Cartography of a Cardiac Parasitic Infection
Laura-Isobel McCall , James T. Morton , Jean A. Bernatchez , Jair Lage de Siqueira-Neto
Analytical Chemistry 89 ( 19) 10414 -10421
16
2017