Characterizing the APEC pathotype

Kylie E. Rodriguez-Siek , Catherine W. Giddings , Curt Doetkott , Timothy J. Johnson
Veterinary Research 36 ( 2) 241 -256

420
2005
DNA sequence and comparative genomics of pAPEC-O2-R, an avian pathogenic Escherichia coli transmissible R plasmid.

Timothy J. Johnson , Kylie E. Siek , Sara J. Johnson , Lisa K. Nolan
Antimicrobial Agents and Chemotherapy 49 ( 11) 4681 -4688

118
2005
Impact of co-carriage of IncA/C plasmids with additional plasmids on the transfer of antimicrobial resistance in Salmonella enterica isolates.

Jing Han , Sean J. Pendleton , Joanna Deck , Ruby Singh
International Journal of Food Microbiology 271 77 -84

8
2018
Prevalence and trend analysis of antimicrobial resistance in clinical Escherichia coli isolates collected from diseased pigs in the USA between 2006 and 2016.

Shivdeep Singh Hayer , Albert Rovira , Karen Olsen , Timothy J. Johnson
Transboundary and Emerging Diseases 67 ( 5) 1930 -1941

5
2020
The gut microbiome of nonhuman primates: Lessons in ecology and evolution.

Jonathan B. Clayton , Andres Gomez , Katherine Amato , Dan Knights
American Journal of Primatology 80 ( 6)

101
2018
Bacterial community structure and function distinguish gut sites in captive red-shanked doucs (Pygathrix nemaeus).

Jonathan B Clayton , Robin R Shields‐Cutler , Susan L Hoops , Gabriel A Al‐Ghalith
American Journal of Primatology 81

2
2019
Complete sequence of pEC14_114, a highly conserved IncFIB/FIIA plasmid associated with uropathogenic Escherichia coli cystitis strains.

Chitrita DebRoy , Mandeep S. Sidhu , Upal Sarker , Bhushan M. Jayarao
Plasmid 63 ( 1) 53 -60

20
2010
Comparative genomics and phylogeny of the IncI1 plasmids: A common plasmid type among porcine enterotoxigenic Escherichia coli

Timothy J. Johnson , Sara M. Shepard , Bernadette Rivet , Jessica L. Danzeisen
Plasmid 66 ( 3) 144 -151

52
2011
Expansion of the IncX plasmid family for improved identification and typing of novel plasmids in drug-resistant Enterobacteriaceae

Timothy J. Johnson , Eliza M. Bielak , Daniela Fortini , Lars Hestbjerg Hansen
Plasmid 68 ( 1) 43 -50

256
2012
Transcriptome modulations due to A/C2 plasmid acquisition.

Kevin S. Lang , Timothy J. Johnson
Plasmid 80 83 -89

15
2015
Characterization of Acr2, an H-NS-like protein encoded on A/C2-type plasmids.

Kevin S. Lang , Timothy J. Johnson
Plasmid 87 17 -27

14
2016
Merging Metagenomics and Spatial Epidemiology To Understand the Distribution of Antimicrobial Resistance Genes from Enterobacteriaceae in Wild Owls.

Elizabeth A. Miller , Julia B. Ponder , Michelle Willette , Timothy J. Johnson
Applied and Environmental Microbiology 86 ( 20)

1
2020
Chicken Intestinal Mycobiome: Initial Characterization and Its Response to Bacitracin Methylene Disalicylate.

Kelsy Robinson , Yingping Xiao , Timothy J. Johnson , Binlong Chen
Applied and Environmental Microbiology 86 ( 13)

2020
A consistent and predictable commercial broiler chicken bacterial microbiota in antibiotic-free production displays strong correlations with performance

Timothy J. Johnson , Bonnie P. Youmans , Sally Noll , Carol Cardona
Applied and Environmental Microbiology 84 ( 12)

122
2018
RESPIRATORY AND GUT MICROBIOTA IN COMMERCIAL TURKEY FLOCKS WITH DISPARATE WEIGHT GAIN TRAJECTORIES DISPLAY DIFFERENTIAL COMPOSITIONAL DYNAMICS

Kara J. M. Taylor , John M. Ngunjiri , Michael C. Abundo , Hyesun Jang
Applied and Environmental Microbiology 86 ( 12)

5
2020
124
2006
Comparison of Escherichia coli isolates implicated in human urinary tract infection and avian colibacillosis.

Kylie E. Rodriguez-Siek , Catherine W. Giddings , Curt Doetkott , Timothy J. Johnson
Microbiology 151 ( 6) 2097 -2110

301
2005
27
2012
Assessment of two DNA extraction kits for profiling poultry respiratory microbiota from multiple sample types.

Mahesh K. C. , Bonnie P. Weber , Timothy J. Johnson , Chang-Won Lee
PLOS ONE 16 ( 1)

2021
Multiple Discharges of Treated Municipal Wastewater Have a Small Effect on the Quantities of Numerous Antibiotic Resistance Determinants in the Upper Mississippi River

Timothy M. LaPara , Matthew Madson , Spencer Borchardt , Kevin S. Lang
Environmental Science & Technology 49 ( 19) 11509 -11515

53
2015