Decomposing complex reaction networks using random sampling, principal component analysis and basis rotation

Christian L Barrett , Markus J Herrgard , Bernhard O Palsson
BMC Systems Biology 3 ( 1) 30 -30

59
2009
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox

Scott A Becker , Adam M Feist , Monica L Mo , Gregory Hannum
Nature Protocols 2 ( 3) 727 -738

994
2007
Endophytic fungus and uses therefor

Wayne A Green , Markus J Herrgard , Janne S Kerovuo , David Lomelin

82
2011
Technical University of Denmark

Markus J Herrgard , Lasse Ebdrup Pedersen , Nathan E Lewis , Anders Bech Bruntse
Denmark

5
Multi-Omics Analysis of Fatty Alcohol Production in Engineered Yeasts Saccharomyces cerevisiae and Yarrowia lipolytica (vol 10, 747, 2019)

Jonathan Dahlin , Carina Holkenbrink , Eko Roy Marella , Guokun Wang
FRONTIERS IN GENETICS 11

2021
Methods for modeling Chinese hamster ovary (CHO) cell metabolism

Markus Herrgard , Lasse Ebdrup Pedersen , Nathan E Lewis , Anders Bech Bruntse

5
2015
Dietary Change Enables Robust Growth-Coupling of Heterologous Methyltransferase Activity in Yeast.

Anne Sofie Lærke Hansen , Maitreya J Dunham , Dushica Arsovska , Jie Zhang
ACS Synthetic Biology 9 ( 12) 3408 -3415

2020
Reconstruction of microbial transcriptional regulatory networks.

Markus J Herrgård , Markus W Covert , Bernhard Ø Palsson
Current Opinion in Biotechnology 15 ( 1) 70 -77

136
2004
Untangling the web of functional and physical interactions in yeast

Markus J Herrgård , Bernhard Ø Palsson
Journal of Biology 4 ( 2) 5 -5

5
2005
Do genome-scale models need exact solvers or clearer standards?

Ali Ebrahim , Eivind Almaas , Eugen Bauer , Aarash Bordbar
Molecular Systems Biology 11 ( 10) 831 -831

44
2015
Network-based prediction of human tissue-specific metabolism

Tomer Shlomi , Moran N Cabili , Markus J Herrgård , Bernhard Ø Palsson
Nature Biotechnology 26 ( 9) 1003 -1010

510
2008
Systems biology solutions for biochemical production challenges.

Anne Sofie Lærke Hansen , Rebecca M. Lennen , Nikolaus Sonnenschein , Markus J Herrgård
Current Opinion in Biotechnology 45 85 -91

22
2017
Connecting extracellular metabolomic measurements to intracellular flux states in yeast.

Monica L Mo , Bernhard Ø Palsson , Markus J Herrgård
BMC Systems Biology 3 ( 1) 37 -37

509
2009
Identification of Genome-Scale Metabolic Network Models Using Experimentally Measured Flux Profiles

Markus J Herrgård , Stephen S Fong , Bernhard Ø Palsson
PLOS Computational Biology 2 ( 7)

149
2005
Predictable tuning of protein expression in bacteria

Mads T Bonde , Margit Pedersen , Michael S Klausen , Sheila I Jensen
Nature Methods 13 ( 3) 233 -236

77
2016
MARSI: metabolite analogues for rational strain improvement

João G R Cardoso , Ahmad A Zeidan , Kristian Jensen , Nikolaus Sonnenschein
Bioinformatics 34 ( 13) 2319 -2321

5
2018
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

Markus J Herrgård , Neil Swainston , Paul Dobson , Warwick B Dunn
Nature Biotechnology 26 ( 10) 1155 -1160

656
2008
9
2019
Flagellar Biosynthesis In Silico: Building Quantitative Models of Regulatory Networks

Markus J Herrgård , Bernhard Ø Palsson
Cell 117 ( 6) 689 -690

3
2004
Cell-free fetal DNA for genetic evaluation in Copenhagen Pregnancy Loss Study (COPL): a prospective cohort study

Tanja Schlaikjær Hartwig , Louise Ambye , Jennifer R Gruhn , Jesper Friis Petersen
The Lancet 401 ( 10378) 762 -771

1
2023