Remo Rohs
机构: Professor and Chair of Quantitative and Computational Biology, University of Southern California
主页: rohslab.org
每年引用次数
引用次数
引用: 10,304
H-指数: 49
I10-指数 : 69
出版物: 88
Origins of Specificity in Protein-DNA Recognition
Remo Rohs , Xiangshu Jin , Sean M. West , Rohit Joshi
Annual Review of Biochemistry 79 ( 1) 233 -269
917
2010
ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo
Gabriel E. Zentner , Sivakanthan Kasinathan , Beibei Xin , Remo Rohs
Nature Communications 6 ( 1) 8733 -8733
110
2015
Quantitative modeling of transcription factor binding specificities using DNA shape
Tianyin Zhou , Ning Shen , Lin Yang , Namiko Abe
Proceedings of the National Academy of Sciences of the United States of America 112 ( 15) 4654 -4659
159
2015
Landscape of DNA binding signatures of myocyte enhancer factor-2B reveals a unique interplay of base and shape readout.
Ana Carolina Dantas Machado , Brendon H Cooper , Xiao Lei , Rosa Di Felice
Nucleic Acids Research 48 ( 15) 8529 -8544
3
2020
The role of DNA shape in protein–DNA recognition
Remo Rohs , Sean M. West , Alona Sosinsky , Peng Liu
Nature 461 ( 7268) 1248 -1253
1,041
2009
Deep Graph Embedding for Ranking Optimization in E-commerce
Chen Chu , Zhao Li , Beibei Xin , Fengchao Peng
conference on information and knowledge management 2018 2007 -2015
6
2018
Functional specificity of a Hox protein mediated by the recognition of minor groove structure
Rohit Joshi , Jonathan M. Passner , Remo Rohs , Rinku Jain
Cell 131 ( 3) 530 -543
362
2007
Cofactor Binding Evokes Latent Differences in DNA Binding Specificity between Hox Proteins
Matthew Slattery , Todd Riley , Peng Liu , Namiko Abe
Cell 147 ( 6) 1270 -1282
367
2011
Structure of the Forkhead Domain of FOXA2 Bound to a Complete DNA Consensus Site
Jun Li , Ana Carolina Dantas Machado , Ming Guo , Jared M. Sagendorf
Biochemistry 56 ( 29) 3745 -3753
23
2017
Methylene Blue Binding to DNA with Alternating GC Base Sequence: A Modeling Study
Remo Rohs , Heinz Sklenar , Richard Lavery , Beate Röder
Journal of the American Chemical Society 122 ( 12) 2860 -2866
143
2000
Using internal and collective variables in Monte Carlo simulations of nucleic acid structures: chain breakage/closure algorithm and associated Jacobians.
Heinz Sklenar , Daniel Wüstner , Remo Rohs
Journal of Computational Chemistry 27 ( 3) 309 -315
25
2006
Relationship between histone modifications and transcription factor binding is protein family specific.
Beibei Xin , Remo Rohs
Genome Research 28 ( 3) 321 -333
47
2018
Exposing the secrets of sex determination.
Remo Rohs , Ana Carolina Dantas Machado , Lin Yang
Nature Structural & Molecular Biology 22 ( 6) 437 -438
2
2015
Transcription factor family‐specific DNA shape readout revealed by quantitative specificity models
Lin Yang , Yaron Orenstein , Arttu Jolma , Yimeng Yin
Molecular Systems Biology 13 ( 2) 910 -910
63
2017
Covariation between homeodomain transcription factors and the shape of their DNA binding sites
Iris Dror , Tianyin Zhou , Yael Mandel-Gutfreund , Remo Rohs
Nucleic Acids Research 42 ( 1) 430 -441
43
2014
TFBSshape: a motif database for DNA shape features of transcription factor binding sites
Lin Yang , Tianyin Zhou , Iris Dror , Anthony Mathelier
Nucleic Acids Research 42 148 -155
133
2014
Conformations of p53 response elements in solution deduced using site-directed spin labeling and Monte Carlo sampling
Xiaojun Zhang , Ana Carolina Dantas Machado , Yuan Ding , Yongheng Chen
Nucleic Acids Research 42 ( 4) 2789 -2797
20
2014
DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale
Tianyin Zhou , Lin Yang , Yan Lu , Iris Dror
Nucleic Acids Research 41 56 -62
197
2013
Control of DNA minor groove width and Fis protein binding by the purine 2-amino group
Stephen P. Hancock , Tahereh Ghane , Duilio Cascio , Remo Rohs
Nucleic Acids Research 41 ( 13) 6750 -6760
59
2013
Structure of p53 binding to the BAX response element reveals DNA unwinding and compression to accommodate base-pair insertion
Yongheng Chen , Xiaojun Zhang , Ana Carolina Dantas Machado , Yuan Ding
Nucleic Acids Research 41 ( 17) 8368 -8376
44
2013