Combining species delimitation, species trees, and tests for gene flow clarifies complex speciation in scrub-jays

Devon A DeRaad , John E McCormack , Nancy Chen , A Townsend Peterson
Systematic Biology 71 ( 6) 1453 -1470

2
2022
Specimen collection is essential for modern science

Michael W Nachman , Elizabeth J Beckman , Rauri CK Bowie , Carla Cicero
PLoS biology 21 ( 11) e3002318 -e3002318

10
2023
On the brink of explosion? Identifying the source and potential spread of introduced Zosterops white-eyes in North America

Devon A DeRaad , Marlon E Cobos , Natalie R Hofmeister , Lucas H DeCicco
Biological Invasions 1 -25

2024
Increasing the impact of vertebrate scientific collections through 3D imaging: The openVertebrate (oVert) Thematic Collections Network

David C Blackburn , Doug M Boyer , Jaimi A Gray , Julie Winchester
BioScience 74 ( 3) 169 -186

3
2024
De novo assembly of a chromosome-level reference genome for the California Scrub-Jay, Aphelocoma californica

Devon A DeRaad , Merly Escalona , Phred M Benham , Mohan PA Marimuthu
Journal of Heredity 114 ( 6) 669 -680

4
2023
A highly contiguous reference genome for the Steller’s jay (Cyanocitta stelleri)

Phred M Benham , Carla Cicero , Devon A DeRaad , John E McCormack
Journal of Heredity 114 ( 5) 549 -560

2
2023
Sky islands

John E McCormack , Huateng Huang , L Lacey Knowles , R Gillespie
Encyclopedia of islands 4 841 -843

157
2009
Historical specimens and the limits of subspecies phylogenomics in the New World quails (Odontophoridae)

Jessie F Salter , Peter A Hosner , Whitney LE Tsai , John E McCormack
Molecular Phylogenetics and Evolution 175 107559 -107559

9
2022
A highly contiguous genome assembly for the Yellow Warbler (Setophaga petechia)

Whitney LE Tsai , Merly Escalona , Kimball L Garrett , Ryan S Terrill
Journal of Heredity 115 ( 3) 317 -325

2024
Hybrid zone or hybrid lineage: a genomic reevaluation of Sibley’s classic species conundrum in Pipilo towhees

Devon A DeRaad , Emily E Applewhite , Whitney LE Tsai , Ryan S Terrill
Evolution 77 ( 3) 852 -869

7
2023
Genomic approaches to understanding population divergence and speciation in birds

David PL Toews , Leonardo Campagna , Scott A Taylor , Christopher N Balakrishnan
The Auk 133 ( 1) 13 -30

101
2015
Convergent niche shifts of endangered parrots (genus Amazona) during successful establishment in urban southern California

Brenda R Ramirez , Rowdy J Freeland , Allison Muhlheim , Amanda J Zellmer
Diversity and Distributions 30 ( 4) e13817 -e13817

2024
Transforming museum specimens into genomic resources

John E McCormack , Flor Rodríguez-Gómez , Whitney LE Tsai , Brant C Faircloth
Taylor & Francis/CRC Press

20
2017
Mexican Jay (Aphelocoma ultramarina)

John E McCormack , Jerram L Brown
The Birds of North America Online ( 118)

15
2008
Temporal stability of the hybrid zone between Calocitta magpie‐jays revealed through comparison of museum specimens and iNaturalist photos

Alana K Pizarro , Devon A DeRaad , John E McCormack
Ecology and Evolution 13 ( 3) e9863 -e9863

4
2023
An elevational shift facilitated the Mesoamerican diversification of Azure‐hooded Jays (Cyanolyca cucullata) during the Great American Biotic Interchange

John E McCormack , Molly M Hill , Devon A DeRaad , Eliza J Kirsch
Ecology and Evolution 13 e10411 -e10411

1
2023
Molecular identification of a mystery rail from Panama results in the first country record of King Rail Rallus elegans

James M Maley , Tyng M Liu , Whitney LE Tsai , John E McCormack
Bulletin of the British Ornithologists’ Club 136 291 -293

1
2016
Phylogenomics of montane frogs of the Brazilian Atlantic Forest is consistent with isolation in sky islands followed by climatic stability

Marcio R Pie , Brant C Faircloth , Luiz F Ribeiro , Marcos R Bornschein
Biological Journal of The Linnean Society 125 ( 1) 72 -82

17
2018