The Plant Ontology: A common reference ontology for plants

L Walls Ramona , D Cooper Laurel , Elser Justin , W Stevenson Dennis

1
2010
Ontologies for biologists: a community model for the annotation of genomic data.

M. ASHBURNER , C.J. MUNGALL , S.E. LEWIS
Cold Spring Harbor Symposia on Quantitative Biology 68 227 -236

29
2003
The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease

Tudor Groza , Sebastian Köhler , Dawid Moldenhauer , Nicole Vasilevsky
American Journal of Human Genetics 97 ( 1) 111 -124

141
2015
A Whole-Genome Analysis Framework for Effective Identification of Pathogenic Regulatory Variants in Mendelian Disease

Damian Smedley , Max Schubach , Julius O.B. Jacobsen , Sebastian Köhler
American Journal of Human Genetics 99 ( 3) 595 -606

130
2016
Phenotype ontologies: the bridge between genomics and evolution

P MABEE , M ASHBURNER , Q CRONK , G GKOUTOS
Trends in Ecology and Evolution 22 ( 7) 345 -350

113
2007
SOME OBSERVATIONS ON OCEAN DUMPING IN GULF OF MEXICO

F NEWMAN , J PRONI , HB STEWART , T ICHIYE
TRANSACTIONS-AMERICAN GEOPHYSICAL UNION 58 ( 12) 1177 -1177

1977
Investigating the importance of anatomical homology for cross-species phenotype comparisons using semantic similarity.

PRASHANTI MANDA , CHRISTOPHER J. MUNGALL , JAMES P. BALHOFF , HILMAR LAPP
Proceedings of the Pacific Symposium 132 -143

4
2016
by Subject

Maria Dornelas , Cher Chow , Robert Patchett , Tom Breeze
Policy 9 11 -2020

Ontobee: A Linked Data Server that publishes RDF and HTML data simultaneously

Zuoshuang Xianga , Chris Mungallb , Alan Ruttenbergc , Yongqun Hea
Semantic Web Journal

1
2012
Expressing time-dependent relations through temporal qualifications

Niels GREWE , Janna HASTINGS , Ludger JANSEN , Alan RUTTENBERG

1
Expressing time-dependent relations through temporal qualifications (unpublished draft)

Niels GREWE , Janna HASTINGS , Ludger JANSEN , Alan RUTTENBERG

1
2012
The Plant Trait Ontology Links Wheat Traits for Crop Improvement and Genomics

Laurel COOPER , Marie-Angélique LAPORTE , Justin ELSER , Victoria Carollo

Use of OWL within the Gene Ontology

Christopher J Mungall , Heiko Dietze , David Osumi-Sutherland
bioRxiv 010090

7
2014
Environmental Semantics for Sustainable Development in an Interconnected Biosphere

Christopher J Mungall , Pier Luigi Buttigieg , Ramona L Walls , Mark Jensen
EPIC3ICBO/BioCreative 2016, Corvalis, Oregon, USA, 2016-08-01-2016-08-04CEUR Workshop Proceedings

4
2016
Extension of Roles in the ChEBI Ontology

Christopher J Mungall , Nicole Vasilevsky , Charles Tapley Hoyt , Daniel Domingo-Fernández
Manubot

2020
The Monarch Initiative: An integrative data and analytic platform connecting phenotypes to genotypes across species

Christopher J Mungall , Julie A McMurry , Sebastian Köhler , James P Balhoff
bioRxiv 055756

252
2016
Reactome and the Gene Ontology: Digital convergence of data resources.

Christopher J Mungall , James P Balhoff , Laurent-Philippe Albou , Benjamin M Good
Bioinformatics

13
2021
The Human Phenotype Ontology in 2021.

Sebastian Köhler , Michael Gargano , Nicolas Matentzoglu , Leigh C Carmody
Nucleic Acids Research 49 1207

5
2021
The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments

Paola Roncaglia , Maryann E Martone , David P Hill , Tanya Z Berardini
Journal of Biomedical Semantics 4 ( 1) 20 -20

35
2013
The environment ontology: contextualising biological and biomedical entities

, Pier Buttigieg , Norman Morrison , Barry Smith
Journal of Biomedical Semantics 4 ( 1) 43 -43

272
2013