All in the Name: A Review of Current Standards and the Evolution of Histopathological Nomenclature for Laboratory Animals

Robert Hoehndorf , Colin McKerlie , Mark Cesta , Robert Cardiff
Institute for Laboratory Animal Research

3
2018
Improving the diagnosis of heart failure in patients with atrial fibrillation.

Kazem Rahimi , Simrat K Gill , Kieran O'Connor , Georgios V Gkoutos
Heart 107 ( 11) 902 -908

2
2021
The Role of Autophagy and lncRNAs in the Maintenance of Cancer Stem Cells.

Georgios V Gkoutos , Loukia Tsaprouni , John A Williams , Suzanne D Turner
Cancers 13 ( 6) 1239

2021
Improved characterisation of clinical text through ontology-based vocabulary expansion.

Luke T Slater , William Bradlow , Simon Ball , Robert Hoehndorf
Journal of Biomedical Semantics 12 ( 1) 7 -7

1
2021
Integration of the Microbiome, Metabolome and Transcriptomics Data Identified Novel Metabolic Pathway Regulation in Colorectal Cancer.

Georgios V Gkoutos , Prasoon Agarwal , Animesh Acharjee , Vartika Bisht
International Journal of Molecular Sciences 22 ( 11)

8
2021
A Review of Current Standards and the Evolution of Histopathology Nomenclature for Laboratory Animals

Susan A Elmore , Robert Cardiff , Mark F Cesta , Georgios V Gkoutos
ILAR Journal 59 ( 1) 29 -39

5
2018
The anatomy of phenotype ontologies: principles, properties and applications.

Georgios V Gkoutos , Paul N Schofield , Robert Hoehndorf
Briefings in Bioinformatics 19 ( 5) 1008 -1021

46
2018
Ontology-based cross-species integration and analysis of Saccharomyces cerevisiae phenotypes

Georgios V Gkoutos , Robert Hoehndorf
Journal of Biomedical Semantics 3 ( 2) 1 -10

6
2012
Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology.

Anika Oellrich , Georgios V Gkoutos , Robert Hoehndorf , Dietrich Rebholz-Schuhmann
Journal of Biomedical Semantics 3 ( 2) 1 -9

7
2012
The Drosophila phenotype ontology

David Osumi-Sutherland , Steven J Marygold , Gillian H Millburn , Peter A McQuilton
Journal of Biomedical Semantics 4 ( 1) 30 -30

18
2013
The mouse pathology ontology, MPATH; structure and applications

Paul N Schofield , John P Sundberg , Beth A Sundberg , Colin McKerlie
Journal of Biomedical Semantics 4 ( 1) 18 -18

27
2013
Representing physiological processes and their participants with PhysioMaps.

Daniel L Cook , Maxwell L Neal , Robert Hoehndorf , Georgios V Gkoutos
Journal of Biomedical Semantics 4 ( 1) 1 -9

10
2013
Integrating phenotype ontologies across multiple species

Christopher J Mungall , Georgios V Gkoutos , Cynthia L Smith , Melissa A Haendel
Genome Biology 11 ( 1) 1 -16

261
2010
Uberon, an integrative multi-species anatomy ontology

Christopher J Mungall , Carlo Torniai , Georgios V Gkoutos , Suzanna E Lewis
Genome Biology 13 ( 1) 1 -20

611
2012
An ontology approach to comparative phenomics in plants.

Anika Oellrich , Ramona L Walls , Ethalinda Cannon , Steven B Cannon
Plant Methods 11 ( 1) 10 -10

43
2015
Data-driven discovery and validation of circulating blood-based biomarkers associated with prevalent atrial fibrillation.

Winnie Chua , Yanish Purmah , Victor R Cardoso , Georgios V Gkoutos
European Heart Journal 40 ( 16) 1268 -1276

52
2019
Vec2SPARQL: integrating SPARQL queries and knowledge graph embeddings

Maxat Kulmanov , Senay Kafkas , Andreas Karwath , Alexander Malic
bioRxiv 463778

1
2018
Aber-OWL: a framework for ontology-based data access in biology

Robert Hoehndorf , Luke Slater , Paul N Schofield , Georgios V Gkoutos
BMC Bioinformatics 16 ( 1) 26 -26

65
2015
Exploring binary relations for ontology extension and improved adaptation to clinical text

Luke T Slater , Robert Hoehndorf , Andreas Karwath , Georgios V Gkoutos
bioRxiv

2
2020