引用次数
引用: 29,966
H-指数: 58
I10-指数 : 87
出版物: 177
Aggregation of recount3 RNA-seq data improves inference of consensus and tissue-specific gene co-expression networks
Prashanthi Ravichandran , Princy Parsana , Rebecca Keener , Kaspar D Hansen
bioRxiv 2024.01. 20.576447 -2024.01. 20.576447
2024
Package ‘bsseq’
Kasper Daniel Hansen , Peter Hickey , Maintainer Kasper Daniel Hansen
2016
Package ‘Rgraphviz’
Kasper Daniel Hansen , Jeff Gentry , Li Long , Robert Gentleman
2015
Package ‘minfi’
Microarray biocViews DNAMethylation , DataImport TwoChannel , QualityControl Preprocessing , Kasper Daniel Hansen
2014
Package ‘minfi’
Kasper Daniel Hansen , Martin Aryee , Maintainer Kasper Daniel Hansen , Biostrings cRanges
2013
Package ‘cqn’
Jean Zhijin Wu , Kasper Daniel Hansen , Maintainer Kasper Daniel Hansen
2013
Package ‘illuminaio’
Keith Baggerly , Henrik Bengtsson , Kasper Daniel Hansen , Matt Ritchie
2013
Package ‘Rgraphviz’
Jeff Gentry , Li Long , Robert Gentleman , Seth Falcon
2013
Package ‘bsseqData’
Kasper Daniel Hansen , Maintainer Kasper Daniel Hansen , CancerData biocViews Genome , SequencingData ColonCancerData
2013
Package ‘affxparser’
Henrik Bengtsson , James Bullard , Maintainer Kasper Daniel Hansen
2013
Rail-dbGaP: a protocol and tool for analyzing protected genomic data in a commercial cloud
Abhinav Nellore , Christopher Wilks , Kasper D Hansen , Jeffrey T Leek
bioRxiv 035287
2
2015
Human brain region-specific variably methylated regions are enriched for heritability of distinct neuropsychiatric traits.
Lindsay F Rizzardi , Peter F Hickey , Adrian Idrizi , Rakel Tryggvadóttir
Genome Biology 22 ( 1) 116 -116
10
2021
Human methylome variation across Infinium 450K data on the Gene Expression Omnibus.
Reid F Thompson , Abhinav Nellore , Kasper D Hansen , Sean K Maden
NAR genomics and bioinformatics 3 ( 2)
7
2021
Reversible switching between epigenetic states in honeybee behavioral subcastes
Brian R Herb , Florian Wolschin , Kasper D Hansen , Martin J Aryee
Nature Neuroscience 15 ( 10) 1371 -1373
248
2012
Reproducible RNA-seq analysis using recount2.
Leonardo Collado-Torres , Abhinav Nellore , Kai Kammers , Shannon E Ellis
Nature Biotechnology 35 ( 4) 319 -321
332
2017
Functional normalization of 450k methylation array data improves replication in large cancer studies
Jean-Philippe Fortin , Aurélie Labbe , Mathieu Lemire , Brent W Zanke
Genome Biology 15 ( 11) 503 -503
697
2014
Age and sun exposure-related widespread genomic blocks of hypomethylation in nonmalignant skin.
Amy R Vandiver , Rafael A Irizarry , Kasper D Hansen , Luis A Garza
Genome Biology 16 ( 1) 80 -80
75
2015
Cloud-scale RNA-sequencing differential expression analysis with Myrna
Ben Langmead , Kasper D Hansen , Jeffrey T Leek ,
Genome Biology 11 ( 8) 1 -11
264
2010
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
Kasper D Hansen , Benjamin Langmead , Rafael A Irizarry
Genome Biology 13 ( 10) 1 -10
465
2012
Sequencing technology does not eliminate biological variability
Kasper D Hansen , Zhijin Wu , Rafael A Irizarry , Jeffrey T Leek
Nature Biotechnology 29 ( 7) 572 -573
146
2011
Andrew P. Feinberg Rafael A Irizarry Ben Langmead Andrew E. Jaffe Hector Corrada Bravo Martin J. Aryee Jeff Leek Sandrine Dudoit Jean-Philippe Fortin Christine Ladd-Acosta Sean Davis Hans Tomas Bjornsson Levi Waldron Leandros Boukas Loyal A. Goff Sarven Sabunciyan Elana J Fertig zhijin wu Wolfgang Huber Leonardo Collado-Torres