Bacterial infection remodels the DNA methylation landscape of human dendritic cells

Alain Pacis , Ludovic Tailleux , Alexander M. Morin , John Lambourne
Genome Research 25 ( 12) 1801 -1811

129
2015
Whole-genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver

Xin Li , Yun Liu , Tal Salz , Kasper D. Hansen
Genome Research 26 ( 12) 1730 -1741

56
2016
Co-expression analysis is biased by a mean-correlation relationship

Yi Wang , Stephanie C. Hicks , Kasper D. Hansen
bioRxiv

1
2020
A Quantitative Proteome Map of the Human Body.

Lihua Jiang , Meng Wang , Shin Lin , Ruiqi Jian
Cell 183 ( 1)

154
2020
'Gap hunting' to identify multimodal distributions of DNA methylation

Shan V. Andrews , Christine Ladd-Acosta , Andrew P. Feinberg , Kasper D. Hansen
bioRxiv 059659

2016
Choice of reference genome can introduce massive bias in bisulfite sequencing data

Phillip Wulfridge , Ben Langmead , Andrew P. Feinberg , Kasper D. Hansen
bioRxiv 076844

6
2016
recount: A large-scale resource of analysis-ready RNA-seq expression data

Leonardo Collado-Torres , Abhinav Nellore , Kai Kammers , Shannon E Ellis
bioRxiv 068478

5
2016
Metabolic effects of air pollution exposure and reversibility

Sanjay Rajagopalan , Bongsoo Park , Rengasamy Palanivel , Vinesh Vinayachandran
Journal of Clinical Investigation 130 ( 11) 6034 -6040

4
2020
Public data and open source tools for multi-assay genomic investigation of disease.

Lavanya Kannan , Marcel Ramos , Angela Re , Nehme El-Hachem
Briefings in Bioinformatics 17 ( 4) 603 -615

42
2016
Testing and Validation of Computational Methods for Mass Spectrometry

Laurent Gatto , Kasper D. Hansen , Michael R. Hoopmann , Henning Hermjakob
Journal of Proteome Research 15 ( 3) 809 -814

22
2016
10
2020
Fertility pattern does not explain social gradient in breast cancer in denmark.

Hella Danø , Kasper Daniel Hansen , Per Jensen , Jørgen Holm Petersen
International Journal of Cancer 111 ( 3) 451 -456

39
2004
Increased methylation variation in epigenetic domains across cancer types

Kasper Daniel Hansen , Winston Timp , Héctor Corrada Bravo , Sarven Sabunciyan
Nature Genetics 43 ( 8) 768 -775

1,128
2011
Use of census data for construction of fertility history for Danish women.

Hella Danø , Rune Jacobsen , Kasper Daniel Hansen , Jørn Korsbø Petersen
Scandinavian Journal of Public Health 32 ( 6) 435 -441

2
2004
Genome-wide identification of alternative splice forms down-regulated by nonsense-mediated mRNA decay in Drosophila.

Qi Meng , Jan Rehwinkel , Fabian L. Gallusser , Elisa Izaurralde
PLOS Genetics 5 ( 6)

80
2009
The Bioconductor channel in F1000Research

Wolfgang Huber , Vincent J Carey , Sean Davis , Kasper Daniel Hansen
F1000Research 4 ( 217) 217 -217

5
2016
Rgraphviz: Provides plotting capabilities for R graph objects

Kasper Daniel Hansen , Jeff Gentry , Li Long , Robert Gentleman
R package version 2 ( 0)

70
2019