COMPUTATIONAL APPROACHES TO STUDY MICROBES AND MICROBIOMES.

CASEY S. GREENE , JAMES A. FOSTER , BRUCE A. STANTON , DEBORAH A. HOGAN
pacific symposium on biocomputing 21 557 -567

7
2016
Computational Approaches to Study Microbes and Microbiomes

CASEY S GREENE , JAMES A FOSTER , BRUCE A STANTON , DEBORAH A HOGAN
Pac Sym Biocomput 557 -567

9
2016
New in protein structure and function annotation: hotspots, single nucleotide polymorphisms and the 'Deep Web'.

Guy Yachdav , Yanay Ofran , Yana Bromberg , Burkhard Rost
Current Opinion in Drug Discovery & Development 12 ( 3) 408

6
2009
DNA Based Methods in Intelligence - Moving Towards Metagenomics

Gabriella Mason-Buck , Alexandra Graf , Eran Elhaik , Jake Robinson
Preprints

5
2020
Impact of vitamin A transport and storage on intestinal retinoid homeostasis and functions.

Michael L. Chikindas , Costantino Vetriani , Paul Breslin , Nina Isoherranen
Journal of Lipid Research 62 100046 -100046

2021
Low Diversity of Human Variation Despite Mostly Mild Functional Impact of De Novo Variants.

Yannick Mahlich , Yana Bromberg , Zishuo Zeng , Maximillian Miller
Frontiers in Molecular Biosciences 8 635382

2021
Novel reductive dehalogenases from the marine sponge associated bacterium Desulfoluna spongiiphila

Jie Liu , Nora Lopez , Youngbeom Ahn , Tatyana Goldberg
Environmental Microbiology Reports 9 ( 5) 537 -549

11
2017
Computational Approaches for Unraveling the Effects of Variation in the Human Genome and Microbiome

Chengsheng Zhu , Maximilian Miller , Zishuo Zeng , Yanran Wang
Annual Review of Biomedical Data Science 3 ( 1) 411 -432

1
2020
Predicted Molecular Effects of Sequence Variants Link to System Level of Disease

Jonas Reeb , Maximilian Hecht , Yannick Mahlich , Yana Bromberg
PLOS Computational Biology 12 ( 8)

14
2016
MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data

Gilad Wainreb , Haim Ashkenazy , Yana Bromberg , Alina Starovolsky-Shitrit
Nucleic Acids Research 38 ( 21) 7869 -7869

33
2010
Whole exome sequencing identifies novel candidate genes that modify chronic obstructive pulmonary disease susceptibility

Shannon Bruse , Michael Moreau , Yana Bromberg , Jun-Ho Jang
Human Genomics 10 ( 1) 1 -12

20
2016
Ten simple rules for drawing scientific comics.

Jason E. McDermott , Matthew Partridge , Yana Bromberg
PLOS Computational Biology 14 ( 1)

11
2018
TrAnsFuSE refines the search for protein function: oxidoreductases

Arye Harel , Paul Falkowski , Yana Bromberg
Integrative Biology 4 ( 7) 765 -777

10
2012
VarI-SIG 2015: methods for personalized medicine – the role of variant interpretation in research and diagnostics

Yana Bromberg , Emidio Capriotti , Hannah Carter
BMC Genomics 17 ( S2) 425 -425

2
2016
Association Between Variants of PRDM1 and NDP52 and Crohn's Disease, Based on Exome Sequencing and Functional Studies

David Ellinghaus , Hu Zhang , Sebastian Zeissig , Simone Lipinski
Gastroenterology 145 ( 2) 339 -347

164
2013
Fingerprinting cities: differentiating subway microbiome functionality.

Chengsheng Zhu , Maximilian Miller , Nick Lusskin , Yannick Mahlich
Biology Direct 14 ( 1) 19 -19

8
2019
Computational prediction shines light on type III secretion origins.

Tatyana Goldberg , Burkhard Rost , Yana Bromberg
Scientific Reports 6 ( 1) 34516 -34516

20
2016
Ch. 20: Deep Carbon through Deep Time: Data-Driven Insights

Robert M. Hazen , Yana Bromberg , Robert T. Downs , Ahmed Eleish
620 -652

4
2019
SNAP predicts effect of mutations on protein function

Yana Bromberg , Guy Yachdav , Burkhard Rost
Bioinformatics 24 ( 20) 2397 -2398

179
2008
PredictProtein—an open resource for online prediction of protein structural and functional features

Guy Yachdav , Edda Kloppmann , Laszlo Kajan , Maximilian Hecht
Nucleic Acids Research 42 ( 8) 337 -343

645
2014