Probing the protein interaction network of Pseudomonas aeruginosa cells by chemical cross-linking mass spectrometry.

Arti T. Navare , Juan D. Chavez , Chunxiang Zheng , Chad R. Weisbrod
Structure 23 ( 4) 762 -773

87
2015
In Vivo Conformational Dynamics of Hsp90 and Its Interactors

Juan D. Chavez , Devin K. Schweppe , Jimmy K. Eng , James E. Bruce
Chemistry & Biology 23 ( 6) 716 -726

76
2016
An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis.

Eugene A. Kapp , Frédéric Schütz , Lisa M. Connolly , John A. Chakel
Proteomics 5 ( 13) 3475 -3490

309
2005
Human Plasma PeptideAtlas

Eric W. Deutsch , Jimmy K. Eng , Hui Zhang , Nichole L. King
Proteomics 5 ( 13) 3497 -3500

120
2005
A likelihood-based scoring method for peptide identification using mass spectrometry

Jimmy K. Eng , Qunhua Li , Matthew Stephens
The Annals of Applied Statistics 6 ( 4) 1775 -1794

2
2012
Sites of ubiquitin attachment in Saccharomyces cerevisiae.

Lea M. Starita , Russell S. Lo , Jimmy K. Eng , Priska D. von Haller
Proteomics 12 ( 2) 236 -240

41
2012
Comet: An open-source MS/MS sequence database search tool

Jimmy K. Eng , Tahmina A. Jahan , Michael R. Hoopmann
Proteomics 13 ( 1) 22 -24

1,185
2013
Proteomics data repositories

Michael Riffle , Jimmy K. Eng
Proteomics 9 ( 20) 4653 -4663

28
2009
A guided tour of the Trans‐Proteomic Pipeline

Eric W. Deutsch , Luis Mendoza , David Shteynberg , Terry Farrah
Proteomics 10 ( 6) 1150 -1159

800
2010
Trans-Proteomic Pipeline supports and improves analysis of electron transfer dissociation data sets.

Eric W. Deutsch , David Shteynberg , Henry Lam , Zhi Sun
Proteomics 10 ( 6) 1190 -1195

35
2010
Protein identification using TurboSEQUEST.

Deborah H. Lundgren , David K. Han , Jimmy K. Eng
Current protocols in human genetics 10 ( 1)

16
2005
Installation and Use of the Computational Proteomics Analysis System (CPAS)

Tamra Myers , Wendy Law , Jimmy K. Eng , Martin McIntosh
Current protocols in human genetics 18 ( 1)

3
2007
Installation and use of LabKey Server for proteomics.

Joshua Eckels , Peter Hussey , Elizabeth K. Nelson , Tamra Myers
Current protocols in human genetics 36 ( 1)

2
2011
Search of sequence databases with uninterpreted high-energy collision-induced dissociation spectra of peptides.

John R. Yates III , Jimmy K. Eng , Karl R. Clauser , Alma L. Burlingame
Journal of the American Society for Mass Spectrometry 7 ( 11) 1089 -1098

61
1996
Systematic measurement of transcription factor-DNA interactions by targeted mass spectrometry identifies candidate gene regulatory proteins

Hamid Mirzaei , Theo A. Knijnenburg , Bong Kim , Max Robinson
Proceedings of the National Academy of Sciences of the United States of America 110 ( 9) 3645 -3650

26
2013
Initial Proteome Analysis of Model Microorganism Haemophilus influenzae Strain Rd KW20

Andrew F. Siegel , Thomas J. Reilly , Kira S. Makarova , Bernhard O. Palsson
Journal of Bacteriology 185 ( 15) 4593 -4602

60
2003
A Photocleavable and Mass Spectrometry Identifiable Cross-Linker for Protein Interaction Studies

Li Yang , Xiaoting Tang , Chad R. Weisbrod , Gerhard R. Munske
Analytical Chemistry 82 ( 9) 3556 -3566

67
2010
Quantification of the Compositional Information Provided by Immonium Ions on a Quadrupole-Time-of-Flight Mass Spectrometer

Laura J. Hohmann , Jimmy K. Eng , Andrew Gemmill , John Klimek
Analytical Chemistry 80 ( 14) 5596 -5606

35
2008
Peptide Sequence Analysis on Quadrupole Mass Spectrometers

Ashley L. McCormack , Jimmy K. Eng , John R. Yates III
Methods 6 ( 3) 274 -283

14
1994
Full-featured, real-time database searching platform enables fast and accurate multiplexed quantitative proteomics

Devin K. Schweppe , Jimmy K. Eng , Derek Bailey , Ramin Rad
bioRxiv 668533

127
2019