Gaussian process modelling for improved resolution in Faraday depth reconstruction

A M M Scaife , A M M Scaife , M Cárcamo , M Cárcamo
Monthly Notices of the Royal Astronomical Society 502 ( 4) 5839 -5853

3
2021
Proteogenomic characterization of human colon and rectal cancer

Samuel H. Payne , Lisa J. Zimmerman , Nathan J. Edwards , R. Reid Townsend
PMC

1,256
2014
CPTAC Studies 1 and 5: dissecting variability in multi-site LC-MS/MS proteomics through quality metrics and robust hierarchical multivariate statistics

Lorenzo J. Vega-Montoto , David L. Tabb , David M. Bunk , Xia Wang
ACS Journal of Proteome Research 86

2014
MetaNovo: a probabilistic approach to peptide and polymorphism discovery in complex metaproteomic datasets

Jonathan M Blackburn , Andrew Jm Nel , Nicola J Mulder , Suereta Fortuin
bioRxiv 605550

3
2019
Phosphoproteomics reveals new insights into the role of PknG during the persistence of pathogenic mycobacteria in host macrophages

Jonathan M. Blackburn , Nelson C. Soares , Tariq A. Ganief , Kehilwe C. Nakedi
bioRxiv

2021
Proteomic Identification and Meta-Analysis in Salvia hispanica RNA-Seq de novo Assemblies.

Bret Cooper , Ashwil Klein , Liam Bell , Lizex H. H. Husselmann
Plants (Basel, Switzerland) 10 ( 4) 765

2021
Quality control in mass spectrometry‐based proteomics

Wout Bittremieux , David L. Tabb , Francis Impens , An Staes
Mass Spectrometry Reviews 37 ( 5) 697 -711

32
2018
Validation of Tandem Mass Spectrometry Database Search Results Using DTASelect

Daniel Cociorva , David L. Tabb , John R. Yates
Current protocols in human genetics 16 ( 1)

167
2006
Employing ProteoWizard to Convert Raw Mass Spectrometry Data

Jerry D. Holman , David L. Tabb , Parag Mallick
Current protocols in human genetics 46 ( 1)

240
2014
Identifying proteomic LC-MS/MS data sets with Bumbershoot and IDPicker.

Jerry D. Holman , Ze‐Qiang Ma , David L. Tabb
Current protocols in human genetics 37 ( 1)

33
2012
A proteomic view of the Plasmodium falciparum life cycle

Laurence Florens , Michael P. Washburn , J. Dale Raine , Robert M. Anthony
Nature 419 ( 6906) 520 -526

1,109
2002
In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics.

Enrique Audain , Julian Uszkoreit , Timo Sachsenberg , Julianus Pfeuffer
Journal of Proteomics 150 170 -182

31
2017
ProRata: A quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation.

Chongle Pan , Guruprasad Kora , W. Hayes McDonald , David L. Tabb
Analytical Chemistry 78 ( 20) 7121 -7131

88
2006
Robust estimation of peptide abundance ratios and rigorous scoring of their variability and bias in quantitative shotgun proteomics.

Chongle Pan , Guruprasad Kora , David L. Tabb , Dale A. Pelletier
Analytical Chemistry 78 ( 20) 7110 -7120

40
2006
QC metrics from CPTAC raw LC-MS/MS data interpreted through multivariate statistics.

Xia Wang , Matthew C. Chambers , Lorenzo J. Vega-Montoto , David M. Bunk
Analytical Chemistry 86 ( 5) 2497 -2509

45
2014
MS2Grouper: group assessment and synthetic replacement of duplicate proteomic tandem mass spectra.

David L. Tabb , Melissa R. Thompson , Gurusahai Khalsa-Moyers , Nathan C. VerBerkmoes
Journal of the American Society for Mass Spectrometry 16 ( 8) 1250 -1261

54
2005
Determination of peptide and protein ion charge states by fourier transformation of isotope-resolved mass spectra

David L. Tabb , Manesh B. Shah , Michael Brad Strader , Heather M. Connelly
Journal of the American Society for Mass Spectrometry 17 ( 7) 903 -915

31
2006
11
2017
Chronic intermittent alcohol disrupts the GluN2B‐associated proteome and specifically regulates group I mGlu receptor‐dependent long‐term depression

Tiffany A. Wills , Anthony J. Baucum , Katherine M. Holleran , Yaoyi Chen
Addiction Biology 22 ( 2) 275 -290

18
2017
Targeted next-generation sequencing identifies novel variants in candidate genes for Parkinson’s disease in Black South African and Nigerian patients

Oluwafemi G Oluwole , Helena Kuivaniemi , Shameemah Abrahams , William L Haylett
BMC Medical Genetics 21 ( 1) 1 -11

6
2020