Rationale and design of the Kidney Precision Medicine Project

Ian H de Boer , Charles E Alpers , Evren U Azeloglu , Ulysses GJ Balis
Kidney International 99 ( 3) 498 -510

65
2021
Interactive Big Data Resource to Elucidate Human Immune Pathways and Diseases

Dmitriy Gorenshteyn , Elena Zaslavsky , Miguel Fribourg , Christopher Y Park
Immunity 43 ( 3) 605 -614

41
2015
Modeling transcriptional regulation of model species with deep learning.

Olga G Troyanskaya , Alicja Tadych , Chandra L Theesfeld , Aaron K Wong
Genome Research 31 ( 6) 1097 -1105

2021
Viable virus shedding during SARS-CoV-2 reinfection.

Olga G Troyanskaya , Stuart C Sealfon , Rachel S G Sealfon , Ana S Gonzalez-Reiche
The Lancet Respiratory Medicine

2021
Single Nucleus Transcriptome and Chromatin Accessibility Landscapes of Human Pituitaries

Olga G Troyanskaya , Stuart C Sealfon , Corrine Kolka Welt , Hanna Pincas
Journal of the Endocrine Society 5

2021
Single nucleus multi-omics regulatory landscape of the murine pituitary.

Olga G Troyanskaya , Stuart C Sealfon , Chirine Toufaily , Corrine K Welt
Nature Communications 12 ( 1) 2677 -2677

2021
Quantitative analysis of fitness and genetic interactions in yeast on a genome scale

Anastasia Baryshnikova , Michael Costanzo , Yungil Kim , Huiming Ding
Nature Methods 7 ( 12) 1017 -1024

269
2010
Genome-wide prediction and functional characterization of the genetic basis of autism spectrum disorder

Arjun Krishnan , Ran Zhang , Victoria Yao , Chandra L Theesfeld
Nature Neuroscience 19 ( 11) 1454 -1462

217
2016
An integrative tissue-network approach to identify and test human disease genes

Victoria Yao , Rachel Kaletsky , William Keyes , Danielle E Mor
Nature Biotechnology 36 ( 11) 1091 -1099

25
2018
Predicting gene function in a hierarchical context with an ensemble of classifiers.

Yuanfang Guan , Chad L Myers , David C Hess , Zafer Barutcuoglu
Genome Biology 9 ( 1) 1 -18

137
2008
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence.

Lourdes Peña-Castillo , Murat Tasan , Chad L Myers , Hyunju Lee
Genome Biology 9 ( 1) 1 -19

292
2008
Individual and combined effects of DNA methylation and copy number alterations on miRNA expression in breast tumors.

Miriam Aure , Suvi-Katri Leivonen , Thomas Fleischer , Qian Zhu
Genome Biology 14 ( 11) 1 -20

70
2013
Broad metabolic sensitivity profiling of a prototrophic yeast deletion collection.

Benjamin VanderSluis , David C Hess , Colin Pesyna , Elias W Krumholz
Genome Biology 15 ( 4) 1 -18

51
2014
Putting the 'bio' into bioinformatics.

Olga G Troyanskaya
Genome Biology 6 ( 10) 351 -351

1
2005
Discovery of biological networks from diverse functional genomic data.

Chad L Myers , Drew Robson , Adam Wible , Matthew A Hibbs
Genome Biology 6 ( 13) 1 -16

207
2005
GIANT 2.0: genome-scale integrated analysis of gene networks in tissues.

Aaron K Wong , Arjun Krishnan , Olga G Troyanskaya
Nucleic Acids Research 46

26
2018
Specific viral RNA drives the SARS CoV-2 nucleocapsid to phase separate

Christiane Iserman , Christine Roden , Mark Boerneke , Rachel Sealfon
bioRxiv

27
2020
Nucleosome-coupled expression differences in closely-related species.

Yuanfang Guan , Victoria Yao , Kyle Tsui , Marinella Gebbia
BMC Genomics 12 ( 1) 466 -466

7
2011