Identifying essential pairwise interactions in elastic network model using the alpha shape theory

Lanyuan Lu , Fei Xia , Dudu Tong , Lifeng Yang
Journal of Computational Chemistry 35 ( 15) 1111 -1121

14
2014
Extracting knowledge from protein structure geometry

Peter Røgen , Patrice Koehl
Proteins: Structure, Function, and Bioinformatics 81 ( 5) 841 -851

3
2013
Surface‐histogram: A new shape descriptor for protein‐protein docking

Shengyin Gu , Patrice Koehl , Joel Hass , Nina Amenta
Proteins 80 ( 1) 221 -238

14
2012
5
2013
Protein side‐chain modeling with a protein‐dependent optimized rotamer library

Patricia Francis-Lyon , Patrice Koehl
Proteins 82 ( 9) 2000 -2017

9
2014
Helix-sheet packing in proteins

Chengcheng Hu , Patrice Koehl
Proteins: Structure, Function, and Bioinformatics 78 ( 7) 1736 -1747

16
2010
PackHelix: a tool for helix-sheet packing during protein structure prediction.

Chengcheng Hu , Patrice Koehl , Nelson Max
Proteins 79 ( 10) 2828 -2843

1
2011
Solution Structure of PMP-D2, a 35-Residue Peptide Isolated from the Insect Locusta migratoria

Georges Mer , Christine Kellenberger , Patrice Koehl , Roland Stote
Biochemistry 33 ( 51) 15397 -15407

64
1994
Measuring the shapes of macromolecules - and why it matters.

Jie Li , Paul Mach , Patrice Koehl
Computational and structural biotechnology journal 8 ( 12)

7
2013
Selective and specific ion binding on proteins at physiologically-relevant concentrations.

Linlin Miao , Haina Qin , Patrice Koehl , Jianxing Song
FEBS Letters 585 ( 19) 3126 -3132

18
2011
DCG++: A data-driven metric for geometric pattern recognition.

Jiahui Guan , Fushing Hsieh , Patrice Koehl
PLOS ONE 14 ( 6)

1
2019
Comparing shapes of genus-zero surfaces

Joel Hass , Patrice Koehl
Journal of Applied and Computational Topology 1 ( 1) 57 -87

5
2017
Bootstrapping on Undirected Binary Networks Via Statistical Mechanics

Hsieh Fushing , Chen Chen , Shan-Yu Liu , Patrice Koehl
Journal of Statistical Physics 156 ( 5) 823 -842

9
2014
Structural and dynamic studies of two antigenic loops from haemagglutinin: a relaxation matrix approach.

Bruno Kieffer , Patrice Koehl , Serge Plaue , Jean-Fran�ois Lef�vre
Journal of Biomolecular NMR 3 ( 1) 91 -112

5
1993
Atomic Environment Energies in Proteins Defined from Statistics of Accessible and Contact Surface Areas

Marc Delarue , Patrice Koehl
Journal of Molecular Biology 249 ( 3) 675 -690

35
1995
Calculation of nuclear magnetic resonance order parameters in proteins by normal mode analysis

Shinji Sunada , Nobuhiro Go , Patrice Koehl
Journal of Chemical Physics 104 ( 12) 4768 -4775

19
1996
Globally optimal cortical surface matching with exact landmark correspondence

Alex Tsui , Devin Fenton , Phong Vuong , Joel Hass
information processing in medical imaging 23 487 -498

19
2013
Protein Structure Prediction

Patrice Koehl
Humana Press 1 -34

4
2010
Modified Poisson–Boltzmann equations for characterizing biomolecular solvation

Patrice Koehl , Frederic Poitevin , Henri Orland , Marc Delarue
Journal of Theoretical and Computational Chemistry 13 ( 03) 1440001

10
2014