From Fossils to Phylogenies

Stephen A. Ramsey , August D. Besser , Baylee N. Goodwin

2017
Exosomal proteomic signatures correlate with drug resistance and carboplatin treatment outcome in a spontaneous model of canine osteosarcoma.

Carl E. Ruby , Claudia S. Maier , Shay Bracha , Stephen A. Ramsey
Cancer Cell International 21 ( 1) 245 -245

2021
Using a General Prior Knowledge Graph to Improve Data-Driven Causal Network Learning.

Stephen A. Ramsey , Meghamala Sinha
aaai spring symposium combining machine learning with knowledge engineering

3
2021
Control of transcriptional variability by overlapping feed-forward regulatory motifs.

Alexander V. Ratushny , Stephen A. Ramsey , Oriol Roda , Yakun Wan
Biophysical Journal 95 ( 8) 3715 -3723

25
2008
Modeling of a competitive microfluidic heterogeneous immunoassay: sensitivity of the assay response to varying system parameters.

Elain Fu , Kjell E. Nelson , Stephen A. Ramsey , Jennifer O. Foley
Analytical Chemistry 81 ( 9) 3407 -3413

27
2009
Inflammatory Ly6Chi monocytes and their conversion to M2 macrophages drive atherosclerosis regression

Karishma Rahman , Yuliya Vengrenyuk , Stephen A. Ramsey , Noemi Rotllan Vila
Journal of Clinical Investigation 127 ( 8) 2904 -2915

136
2017
Analysis of Staphylococcus Infections in a Veterinary Teaching Hospital from 2012 to 2015

Hanna R.C. Shoen , Sasha J. Rose , Stephen A. Ramsey , Helio de Morais
Comparative Immunology Microbiology and Infectious Diseases 66 101332

1
2019
Cholesterol loading reprograms the microRNA-143/145-myocardin axis to convert aortic smooth muscle cells to a dysfunctional macrophage-like phenotype.

Yuliya Vengrenyuk , Hitoo Nishi , Xiaochun Long , Mireille Ouimet
Arteriosclerosis, Thrombosis, and Vascular Biology 35 ( 3) 535 -546

164
2015
Loss of 2 Akt (Protein Kinase B) Isoforms in Hematopoietic Cells Diminished Monocyte and Macrophage Survival and Reduces Atherosclerosis in Ldl Receptor-Null Mice.

Vladimir R. Babaev , Lei Ding , Youmin Zhang , James M. May
Arteriosclerosis, Thrombosis, and Vascular Biology 39 ( 2) 156 -169

15
2019
Transport in two-dimensional paper networks

Elain Fu , Stephen A. Ramsey , Peter Kauffman , Barry Lutz
Microfluidics and Nanofluidics 10 ( 1) 29 -35

351
2011
Identifying Cell Type-Specific Transcription Factors by Integrating ChIP-seq and eQTL Data-Application to Monocyte Gene Regulation.

Mudra Choudhury , Stephen A. Ramsey
Gene regulation and systems biology 10 ( 10) 105 -110

2
2016
A Method for Cross-Species Visualization and Analysis of RNA-Sequence Data

Stephen A. Ramsey
Methods of Molecular Biology 1702 291 -305

3
2018
Exploration of regression models for cancer noncoding mutation recurrence

Tanjin Xu , Stephen A. Ramsey
international conference on bioinformatics 546 -553

1
2016
A systems biology approach to understanding atherosclerosis.

Stephen A. Ramsey , Elizabeth S. Gold , Alan Aderem
Embo Molecular Medicine 2 ( 3) 79 -89

64
2010
Cross-species analysis of the canine and human bladder cancer transcriptome and exome.

Stephen A. Ramsey , Tanjin Xu , Cheri Goodall , Adelaide C. Rhodes
Genes, Chromosomes and Cancer 56 ( 4) 328 -343

16
2017
Control of Signaling in a MAP-kinase Pathway by an RNA-Binding Protein

Susanne Prinz , Christine Aldridge , Stephen A Ramsey , R James Taylor
PLOS ONE 2 ( 2)

20
2007