Overcoming Limitations to Deep Learning in Domesticated Animals with TrioTrain

Jenna Kalleberg , Jacob Rissman , Robert D Schnabel
bioRxiv

2024
Genomic loci involved in sensing environmental cues and metabolism affect seasonal coat shedding in Bos taurus and Bos indicus cattle

Harly J Durbin , Helen Yampara-Iquise , Troy N Rowan , Robert D Schnabel
G3: Genes, Genomes, Genetics 14 ( 2) jkad279 -jkad279

2024
Whole Genome Sequence Data Elucidates Signatures of Cattle Domestication and Global Bovid Migration Patterns

John Miraszek , Robert D Schnabel , Jared E Decker
Plant and Animal Genome Conference/PAG 31 (January 12-17, 2024)

2024
Can Livestock Breeders Ignore Genotype-by-Environment Interactions?

Jared E Decker , Sara M Nilson , AJ Knowles , Troy N Rowan
Plant and Animal Genome XXIX Conference (January 8-12, 2022)

2022
Local Genetic Adaptation in United States Bos taurus Beef Cattle

Troy N Rowan , Robert D Schnabel , Jared E Decker
Plant and Animal Genome XXVII Conference (January 12-16, 2019)

2019
Development and Characterization of a High DensitySNP Genotyping Assay for Cattle

Lakshmi K. Matukumalli , Tad S. Sonstegard , Curtis P. Van Tassell , Cynthia T. Lawley

1,070
2009
DNA markers for cattle growth

Robert D. Schnabel , Jeremy F. Taylor

5
2006
Ensemble-based imputation for genomic selection: an application to Angus cattle.

Daniel Gianola , Robert D. Schnabel , Kent A. Weigel , Xiao-Lin Wu
Interbull Bulletin ( 46) 39 -45

2012
Bos taurus strain:dairy beef (cattle): 1000 Bull Genomes Run 2, Bovine Whole Genome Sequence

Thierry Tribout , James M. Reecy , Johann Sölkner , Reiner Emmerling
Wageningen University & Research

2014
Introgression, admixture, and selection facilitate genetic adaptation to high-altitude environments in cattle.

Luciana C.A. Regitano , Robert D. Schnabel , Laercio R. Porto-Neto , Zhihua Ju
Genomics 113 ( 3) 1491 -1503

2021
CRUMBLER: A tool for the prediction of ancestry in cattle.

Tamar E. Crum , Robert D. Schnabel , Jared E. Decker , Luciana C. A. Regitano
PLOS ONE 14 ( 8)

5
2019
A truncating mutation in ATP13A2 is responsible for adult-onset neuronal ceroid lipofuscinosis in Tibetan terriers

Fabiana H.G. Farias , Rong Zeng , Gary S. Johnson , Fred A. Wininger
Neurobiology of Disease 42 ( 3) 468 -474

92
2011
A mutation in the Warburg syndrome gene, RAB3GAP1, causes a similar syndrome with polyneuropathy and neuronal vacuolation in Black Russian Terrier dogs

Tendai Mhlanga-Mutangadura , Gary S. Johnson , Robert D. Schnabel , Jeremy F. Taylor
Neurobiology of Disease 86 75 -85

13
2016
A simple procedure for directly obtaining haplotype sequences of diploid genomes

Harry A. Noyes , Derek Daly , Ian Goodhead , Suzanne Kay
BMC Genomics 16 ( 1) 642 -642

1
2015
What’s in your next-generation sequence data? An exploration of unmapped DNA and RNA sequence reads from the bovine reference individual

Lynsey K. Whitacre , Polyana C. Tizioto , JaeWoo Kim , Tad S. Sonstegard
BMC Genomics 16 ( 1) 1114 -1114

24
2015
A neonatal encephalopathy with seizures in standard poodle dogs with a missense mutation in the canine ortholog of ATF2

Xuhua Chen , Gary S. Johnson , Robert D. Schnabel , Jeremy F. Taylor
Neurogenetics 9 ( 1) 41 -49

11
2008
A homozygous PIGN missense mutation in Soft-Coated Wheaten Terriers with a canine paroxysmal dyskinesia

Ana L. Kolicheski , Gary S. Johnson , Tendai Mhlanga-Mutangadura , Jeremy F. Taylor
Neurogenetics 18 ( 1) 39 -47

15
2017
History of Linkage Mapping the Bovine Genome

Stephanie D. McKay , Robert D. Schnabel
Bovine Genomics 63 -74

2012
Genomic Selection in Beef Cattle

Jeremy F. Taylor , Stephanie D. McKay , Megan M. Rolf , Holly R. Ramey
Bovine Genomics 211 -233

9
2012
Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals.

Aniek C. Bouwman , Hans D. Daetwyler , Amanda J. Chamberlain , Carla Hurtado Ponce
Nature Genetics 50 ( 3) 362 -367

237
2018