Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles

Farshad Farshidfar , Siyuan Zheng , Marie-Claude Gingras , Yulia Newton
Cell Reports 18 ( 11) 2780 -2794

528
2017
Ampullary Cancers Harbor ELF3 Tumor Suppressor Gene Mutations and Exhibit Frequent WNT Dysregulation

Marie-Claude Gingras , Kyle R Covington , David K Chang , Lawrence A Donehower
Cell Reports 14 ( 4) 907 -919

100
2016
Somatic Mutational Landscape of Splicing Factor Genes and Their Functional Consequences across 33 Cancer Types.

Michael Seiler , Shouyong Peng , Anant A Agrawal , James Palacino
Cell Reports 23 ( 1) 282

309
2018
Integrated Genomic Analysis of the Ubiquitin Pathway across Cancer Types

Zhongqi Ge , Jake S Leighton , Yumeng Wang , Xinxin Peng
Cell Reports 23 ( 1) 213

84
2018
Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas

Gregory P Way , Francisco Sanchez-Vega , Konnor La , Joshua Armenia
Cell Reports 23 ( 1) 172

124
2018
Systematic analysis of splice-site-creating mutations in cancer

Reyka G Jayasinghe , Song Cao , Qingsong Gao , Michael C Wendl
Cell Reports 23 ( 1) 270

180
2018
Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context

Hua-Sheng Chiu , Sonal Somvanshi , Ektaben Patel , Ting-Wen Chen
Cell Reports 23 ( 1) 297

199
2018
Molecular Characterization and Clinical Relevance of Metabolic Expression Subtypes in Human Cancers.

Xinxin Peng , Zhongyuan Chen , Farshad Farshidfar , Xiaoyan Xu
Cell Reports 23 ( 1) 255 -269

175
2018
Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas

Theo A Knijnenburg , Linghua Wang , Michael T Zimmermann , Nyasha Chambwe
Cell Reports 23 ( 1) 239

678
2018
Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas

Joshua D Campbell , Christina Yau , Reanne Bowlby , Yuexin Liu
Cell Reports 23 ( 1) 194

237
2018
Driver Fusions and Their Implications in the Development and Treatment of Human Cancers

Qingsong Gao , Wen-Wei Liang , Steven M Foltz , Gnanavel Mutharasu
Cell Reports 23 ( 1) 227 -238

364
2018
612
2018
The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma

Christopher J Ricketts , Aguirre A De Cubas , Huihui Fan , Christof C Smith
Cell Reports 23 ( 1) 3698

654
2018
ITD assembler: an algorithm for internal tandem duplication discovery from short-read sequencing data

Navin Rustagi , Oliver A Hampton , Jie Li , Liu Xi
BMC Bioinformatics 17 ( 1) 188 -188

12
2016
National Cancer Institute Biospecimen Evidence-Based Practices: Harmonizing Procedures for Nucleic Acid Extraction from Formalin-Fixed, Paraffin-Embedded Tissue

Sarah R. Greytak , Kelly B. Engel , Erik Zmuda , Esmeralda Casas-Silva
Biopreservation and Biobanking 16 ( 4) 247 -250

7
2018
Cross-species identification of genomic drivers of squamous cell carcinoma development across preneoplastic intermediates

Vida Chitsazzadeh , Cristian Coarfa , Jennifer A. Drummond , Tri Nguyen
Nature Communications 7 ( 1) 12601 -12601

71
2016
SMARCA4-inactivating mutations increase sensitivity to Aurora kinase A inhibitor VX-680 in non-small cell lung cancers.

Vural Tagal , Shuguang Wei , Wei Zhang , Rolf A. Brekken
Nature Communications 8 ( 1) 14098 -14098

45
2017
Identifying gene disruptions in novel balanced de novo constitutional translocations in childhood cancer patients by whole-genome sequencing.

Deborah I. Ritter , Katherine Haines , Hannah Cheung , Caleb F. Davis
Genetics in Medicine 17 ( 10) 831 -835

4
2015