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Alexander X Lozano , Aadel A Chaudhuri , Aishwarya Nene , Antonietta Bacchiocchi
Nature medicine 28 ( 2) 353 -362

63
2022
Inferring gene expression from cell-free DNA fragmentation profiles

Mohammad Shahrokh Esfahani , Emily G Hamilton , Mahya Mehrmohamadi , Barzin Y Nabet
Nature biotechnology 40 ( 4) 585 -597

25
2022
Single Cell Spatial Biology for Precision Cancer Medicine

Andrew J Gentles , Ajit J Nirmal , Laura M Heiser , Emma Lundberg
Smpte Journal 549 -553

2022
Integrative molecular and clinical profiling of acral melanoma links focal amplification of 22q11. 21 to metastasis

Farshad Farshidfar , Kahn Rhrissorrakrai , Chaya Levovitz , Cong Peng
Nature communications 13 ( 1) 898

9
2022
Community assessment of methods to deconvolve cellular composition from bulk gene expression

Brian S White , Aurélien de Reyniès , Aaron M Newman , Joshua J Waterfall
bioRxiv 2022.06. 03.494221 -2022.06. 03.494221

7
2022
A tumor deconvolution DREAM challenge: inferring immune infiltration from bulk gene expression data

Brian S White , Andrew J Gentles , Aurélien de Reyniès , Aaron M Newman
Cancer Research 79 ( 13_Supplement) 1690 -1690

5
2019
Multiomic analysis for optimization of combined focal and immunotherapy protocols in murine pancreatic cancer

James Wang , Brett Z Fite , Aris J Kare , Bo Wu
Theranostics 12 ( 18) 7884 -7884

3
2022
A spatial map of human macrophage niches links tissue location with function

Magdalena Matusiak , John W Hickey , Bogdan Luca , Guolan Lu
bioRxiv 2022.08. 18.504434 -2022.08. 18.504434

7
2022
Spatially Segregated Macrophage Populations Predict Distinct Outcomes In Colon Cancer

Magdalena Matusiak , John W Hickey , David GP van IJzendoorn , Guolan Lu
Cancer Discovery

2024
Identification and isolation of a dermal lineage with intrinsic fibrogenic potential

Yuval Rinkevich , Graham G Walmsley , Michael S Hu , Zeshaan N Maan
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651
2015
Natural chimerism and tolerance induction in a colonial chordate

Ayelet Voskoboynik , Aaron M Newman , M Kowarsky , IL Weissman
Advances in Comparative Immunology. Springer

1
2018
Atlas of clinically distinct cell states and ecosystems across human solid tumors

Bogdan A Luca , Chloé B Steen , Magdalena Matusiak , Armon Azizi
Cell 184 ( 21) 5482 -5496. e28

142
2021
Landscape of innate lymphoid cells in human head and neck cancer reveals divergent NK cell states in the tumor microenvironment

Uriel Y Moreno-Nieves , Joshua K Tay , Saumyaa Saumyaa , Nina B Horowitz
Proceedings of the National Academy of Sciences 118 ( 28) e2101169118 -e2101169118

63
2021
High-resolution alignment of single-cell and spatial transcriptomes with CytoSPACE

Milad R Vahid , Erin L Brown , Chloé B Steen , Wubing Zhang
Nature biotechnology 41 ( 11) 1543 -1548

43
2023
Atlas of clinically-distinct cell states and cellular ecosystems across human solid tumors

Bogdan A Luca , Chloé B Steen , Armon Azizi , Magdalena Matusiak
Cancer Research 80 ( 16_Supplement) 3443 -3443

2
2020
Profiling Cellular Ecosystems at Single-Cell Resolution and at Scale with EcoTyper

Chloé B Steen , Bogdan A Luca , Ash A Alizadeh , Andrew J Gentles
Springer US 43 -71

2023
Landscape of tumor cell states and cellular ecosystems in diffuse large B cell lymphoma

Chloe B Steen , Bogdan Luca , Mohammad S Esfahani , Barzin Y Nabet
Cancer Research 80 ( 16_Supplement) 1557 -1557

2020
Quantification of cerebrospinal fluid tumor DNA in lung cancer patients with suspected leptomeningeal carcinomatosis

Tej D Azad , Shigeki Nanjo , Michael C Jin , Jacob J Chabon
npj Precision Oncology 8 ( 1) 121 -121

2024
p53 governs an AT1 differentiation programme in lung cancer suppression

Alyssa M Kaiser , Alberto Gatto , Kathryn J Hanson , Richard L Zhao
Nature 619 ( 7971) 851 -859

14
2023