Characterizing Design Patterns of EHR-Driven Phenotype Extraction Algorithms

Yizhen Zhong , Luke Rasmussen , Yu Deng , Jennifer Pacheco
bioinformatics and biomedicine 1143 -1146

2018
Portable Phenotyping System: A Portable Machine-Learning Approach to i2b2 Obesity Challenge

Himanshu Sharma , Chengsheng Mao , Yizhen Zhang , Haleh Vatani
ieee international conference on healthcare informatics 86 -87

2018
Practical considerations for implementing genomic information resources

Luke V Rasmussen , Casey L Overby , John Connolly , Christopher G Chute
Applied Clinical Informatics 7 ( 3) 870 -882

19
2016
A conceptual model for translating omic data into clinical action.

TimothyM Herr , RobertR Freimuth , Andrea Hartzler , Joseph Kannry
Journal of Pathology Informatics 6 ( 1) 46 -46

15
2015
Practical considerations in genomic decision support: The eMERGE experience.

Timothy M Herr , Suzette J Bielinski , Erwin Bottinger , Ariel Brautbar
Journal of Pathology Informatics 6 ( 1) 50 -50

33
2015
Genetic Variants Associated with Serum Thyroid Stimulating Hormone (TSH) Levels in European Americans and African Americans from the eMERGE Network

Jennifer R. Malinowski , Joshua C. Denny , Suzette J. Bielinski , Melissa A. Basford
PLoS ONE 9 ( 12) e111301

27
2014
Developing a portable natural language processing based phenotyping system

Himanshu Sharma , Chengsheng Mao , Yizhen Zhang , Haleh Vatani
BMC Medical Informatics and Decision Making 19 ( 3) 78

13
2019
Variants Near FOXE1 Are Associated with Hypothyroidism and Other Thyroid Conditions: Using Electronic Medical Records for Genome- and Phenome-wide Studies

Joshua C Denny , Dana C Crawford , Marylyn D Ritchie , Suzette J Bielinski
American Journal of Human Genetics 89 ( 4) 529 -542

210
2011
1
2022
Northwestern University resource and education development initiatives to advance collaborative artificial intelligence across the learning health system

Yuan Luo , Chengsheng Mao , Lazaro N Sanchez‐Pinto , Faraz S Ahmad
Learning Health Systems e10417 -e10417

2024
802 An electronic health record-based approach to identify and characterize patients with immune checkpoint inhibitor-associated arthritis

Steven Tran , Luke Rasmussen , Jennifer Pacheco , Carlos Galvez
Journal for ImmunoTherapy of Cancer 9 ( Suppl 2) A838 -A839

2021
AD-BERT: Using pre-trained language model to predict the progression from mild cognitive impairment to Alzheimer's disease

Chengsheng Mao , Jie Xu , Luke Rasmussen , Yikuan Li
Journal of Biomedical Informatics 144 104442 -104442

9
2023
A DEEP LEARNING MODEL USING RADIOLOGY REPORTS CAN DISTINGUISH HIGH AND LOW RISK OF CIRRHOSIS FAR MORE ACCURATELY THAN ICD CODES

Alexander Huang , Praneet Polineni , Matthew A Antalek , Luke Rasmussen
HEPATOLOGY 76 S1108 -S1109

2022
Analyzing the heterogeneity and complexity of Electronic Health Record oriented phenotyping algorithms

Mike Conway , Richard L Berg , David Carrell , Joshua C Denny
AMIA annual symposium proceedings 2011 274 -274

120
2011
J Pathol Inform

Timothy M Herr , Suzette J Bielinski , Erwin Bottinger , Ariel Brautbar
Journal of Pathology Informatics ( 46/163985)

2015
Evaluation of the google search appliance for patient cohort discovery.

Ryan Oberg , Luke Rasmussen , John Melski , Peggy Peissig
AMIA... Annual Symposium proceedings. AMIA Symposium 1104 -1104

6
2008
Improving Workflow and Security: the Marshfield Data Submission Tracking System

Tuan Nguyen , Peggy Peissig , Laurel Verhagen , Luke Rasmussen

Development of a genomic data flow framework: results of a survey administered to NIH-NHGRI IGNITE and eMERGE consortia participants

Paul Dexter , Henry Ong , Amanda Elsey , Gillian Bell
AMIA Annual Symposium Proceedings 2019 363 -363

3
2019
Quality control pipeline for genome-wide association studies in the eMERGE network: comparing single site QC to a merged QC approach

Marylyn Ritchie , Loren Armstong , Yuki Bradford , Chris Carlson
GENETIC EPIDEMIOLOGY 34 ( 8) 957 -957

1
2010