引用次数
引用: 3,900
H-指数: 33
I10-指数 : 62
出版物: 134
High-resolution genome-wide expression analysis of single myofibers using SMART-Seq.
Darren M. Blackburn , Felicia Lazure , Aldo H. Corchado , Theodore J. Perkins
Journal of Biological Chemistry 294 ( 52) 20097 -20108
11
2019
What do molecules do when we are not looking? State sequence analysis for stochastic chemical systems
Pavel Levin , Jérémie Lefebvre , Theodore J. Perkins
Journal of the Royal Society Interface 9 ( 77) 3411 -3425
2
2012
Robust dynamics in minimal hybrid models of genetic networks.
Theodore J. Perkins , Roy Wilds , Leon Glass
Philosophical Transactions of the Royal Society A 368 ( 1930) 4961 -4975
28
2010
Bayesian Correlation Analysis for Sequence Count Data.
Daniel Sánchez-Taltavull , Parameswaran Ramachandran , Nelson Lau , Theodore J. Perkins
PLOS ONE 11 ( 10)
9
2016
COGEM: A Toolbox for Computational Genomics in Matlab
Theodore J. Perkins
bioRxiv 174896
2017
Targeting the MTF2-MDM2 axis sensitizes refractory acute myeloid leukemia to chemotherapy
Harinad B. Maganti , Hani Jrade , Christopher Cafariello , Janet L. Manias Rothberg
Cancer Discovery 8 ( 11) 1376 -1389
18
2018
Absolute quantification of transcription factors in human erythropoiesis using selected reaction monitoring mass spectrometry.
Mark A. Gillespie , Carmen G. Palii , Daniel Sanchez-Taltavull , Theodore J. Perkins
STAR protocols 1 ( 3) 100216 -100216
1
2020
UTX inhibition as selective epigenetic therapy against TAL1-driven T-cell acute lymphoblastic leukemia
Aissa Benyoucef , Carmen G. Palii , Chaochen Wang , Christopher J. Porter
Genes & Development 30 ( 5) 508 -521
101
2016
PCP and SAX-3/Robo Pathways Cooperate to Regulate Convergent Extension-Based Nerve Cord Assembly in C. elegans
Pavak K Shah , Matthew R Tanner , Ismar Kovacevic , Aysha Rankin
Developmental Cell 41 ( 2) 195 -203
16
2017
Fully polynomial-time computation of maximum likelihood trajectories in Markov chains
Yuri Grinberg , Theodore J. Perkins
Information Processing Letters 118 53 -57
2017
A Fluctuation Method to Quantify In Vivo Fluorescence Data
Nitzan Rosenfeld , Theodore J. Perkins , Uri Alon , Michael B. Elowitz
Biophysical Journal 91 ( 2) 759 -766
70
2006
Gene Selection for the Reconstruction of Stem Cell Differentiation Trees: A Linear Programming Approach
Mohamed A. Ghadie , Nathalie Japkowicz , Theodore J. Perkins
Bioinformatics 31 ( 16) 2676 -2682
2015
On cross-conditional and fluctuation correlations in competitive RNA networks
Daniel Sánchez-Taltavull , Matthew MacLeod , Theodore J. Perkins
Bioinformatics 32 ( 17) 790 -797
4
2016
Accuracy and reproducibility of somatic point mutation calling in clinical-type targeted sequencing data.
Ali Karimnezhad , Gareth A. Palidwor , Kednapa Thavorn , David J. Stewart
BMC Medical Genomics 13 ( 1) 156
1
2020
Chaotic Dynamics in an Electronic Model of a Genetic Network
Leon Glass , Theodore J. Perkins , Jonathan Mason , Hava T. Siegelmann
Journal of Statistical Physics 121 ( 5) 969 -994
23
2005
MaSC: mappability-sensitive cross-correlation for estimating mean fragment length of single-end short-read sequencing data.
Parameswaran Ramachandran , Gareth A. Palidwor , Christopher J. Porter , Theodore J. Perkins
Bioinformatics 29 ( 4) 444 -450
28
2013
Absolute quantification of transcription factors reveals principles of gene regulation in erythropoiesis
Mark A Gillespie , Carmen G Palii , Daniel Sanchez-Taltavull , Paul Shannon
bioRxiv 812123
74
2019
Quantitative Epistasis Analysis and Pathway Inference from Genetic Interaction Data
Hilary Phenix , Katy Morin , Cory Batenchuk , Jacob Parker
PLoS Computational Biology 7 ( 5) e1002048
13
2011
Pooled Screening for Synergistic Interactions Subject to Blocking and Noise
Kyle Li , Doina Precup , Theodore J. Perkins
PLoS ONE 9 ( 1) e85864
5
2014
Reprogramming progeria fibroblasts re-establishes a normal epigenetic landscape.
Zhaoyi Chen , Wing Y. Chang , Alton Etheridge , Hilmar Strickfaden
Aging Cell 16 ( 4) 870 -887
25
2017