Evolutionary scalpels for dissecting tumor ecosystems

Daniel I.S. Rosenbloom , Pablo G. Camara , Tim Chu , Raul Rabadan
Biochimica et Biophysica Acta 1867 ( 2) 69 -83

10
2017
Life cycle synchronization is a viral drug resistance mechanism

Iulia A. Neagu , Jason Olejarz , Mark Freeman , Daniel I.S. Rosenbloom
PLOS Computational Biology 14 ( 2) e1005947 -26

12
2018
Ex vivo analysis identifies effective HIV-1 latency–reversing drug combinations

Gregory M. Laird , C. Korin Bullen , Daniel I.S. Rosenbloom , Alyssa R. Martin
Journal of Clinical Investigation 125 ( 5) 1901 -1912

373
2015
Topological Data Analysis Generates High-Resolution, Genome-wide Maps of Human Recombination

Pablo G. Camara , Daniel I.S. Rosenbloom , Kevin J. Emmett , Arnold J. Levine
Cell systems 3 ( 1) 83 -94

35
2016
Imperfect drug penetration leads to spatial monotherapy and rapid evolution of multi-drug resistance

Stefany Moreno-Gamez , Alison L Hill , Daniel I.S. Rosenbloom , Dmitri A. Petrov
bioRxiv 013003

2
2014
Proliferation of latently infected CD4+ T cells carrying replication-competent HIV-1: Potential role in latent reservoir dynamics

Nina N. Hosmane , Kyungyoon J. Kwon , Katherine M. Bruner , Adam A. Capoferri
Journal of Experimental Medicine 214 ( 4) 959 -972

215
2017
Mutation Rate Evolution in Replicator Dynamics

Benjamin Allen , Daniel I. Scholes Rosenbloom
Bulletin of Mathematical Biology 74 ( 11) 2650 -2675

15
2012
OA1-1 Impact of vorinostat treatment of non-Hodgkin‘s lymphoma on HIV-1 latent reservoir

A. Capoferri , J.C. Ramos , Daniel Xu , D.I.S. Rosenbloom
Journal of virus eradication 3 1

2017
Real-time predictions of reservoir size and rebound time during antiretroviral therapy interruption trials for HIV

A.L. Hill , D.I.S. Rosenbloom , D.R. Kuritzkes , R.F. Siliciano
Journal of virus eradication 1 13

1
2015
Spatiotemporal Genomic Architecture Informs Precision Oncology in Glioblastoma

Jin-Ku Lee , Jiguang Wang , Jason K Sa , Erik Ladewig
Nature Genetics 49 ( 4) 594 -599

222
2017
Applying Topological Principles to Genomic Analysis

Kevin Emmett , Joseph M Chan , Daniel S Rosenbloom , Raul Rabadan

Replication-Competent Noninduced Proviruses in the Latent Reservoir Increase Barrier to HIV-1 Cure

Ya-Chi Ho , Liang Shan , Nina N. Hosmane , Jeffrey Wang
Cell 155 ( 3) 540 -551

1,305
2013
Imitation dynamics of vaccination behaviour on social networks

Feng Fu , Daniel I. Rosenbloom , Long Wang , Martin A. Nowak
Proceedings of The Royal Society B: Biological Sciences 278 ( 1702) 42 -49

428
2011
Imitation dynamics of vaccination behaviour on social

Feng Fu , Daniel I Rosenbloom , Long Wang , Martin A Nowak

89
2015
Evolutionary dynamics of HIV at multiple spatial and temporal scales

Alison Lynn Hill , Daniel Ian Scholes Rosenbloom , Martin A Nowak
Journal of Molecular Medicine

32
Viremic Relapse after HIV-1 Remission in a Perinatally Infected Child

Katherine Luzuriaga , Hannah Gay , Carrie Ziemniak , Keri B. Sanborn
New England Journal of Medicine 372 ( 8) 786 -788

173
2015
Asymptomatic Shedding of Respiratory Virus among an Ambulatory Population across Seasons.

Ruthie Birger , Haruka Morita , Devon Comito , Ioan Filip
mSphere 3 ( 4)

22
2018
2
2018
The urban ecology of respiratory viruses

Ruthie Birger , Haruka Morita , Devon Comito , Ioan Filip
2018 ESA Annual Meeting (August 5--10)

2018